DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scramb1 and si:dkey-62k3.6

DIOPT Version :9

Sequence 1:NP_648389.3 Gene:scramb1 / 326186 FlyBaseID:FBgn0052056 Length:416 Species:Drosophila melanogaster
Sequence 2:XP_017212512.1 Gene:si:dkey-62k3.6 / 100535492 ZFINID:ZDB-GENE-160728-111 Length:461 Species:Danio rerio


Alignment Length:475 Identity:154/475 - (32%)
Similarity:203/475 - (42%) Gaps:115/475 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 QP----NAPPA---EGFGYPPPTGGHNAPYPPAPGHPQPPP------PTNYGFM---------PG 62
            ||    :||||   |.....||....:.|.|    ..||||      |. |.|:         |.
Zfish     3 QPEEPASAPPATELEPDNQQPPVQSDSNPAP----DKQPPPMEIQSEPI-YEFIEDQIYDEPTPD 62

  Fly    63 PQPAGYAPVPQMPP----YGEAPPYGAGQPPYMGGPGGQP------------------PYAGGPG 105
            |..||.....|.|.    ..:..|.....|..:...||.|                  |...||.
Zfish    63 PPSAGLQTKDQTPQVQSVLNQTSPVNVVVPYPIQSSGGNPVQNNFQTVTSQPASLAPTPLPAGPQ 127

  Fly   106 GQ----PPY--------VGG-PGGQPHYGG----GAPPPQAF-----GGYP-----PGPAGPG-G 142
            .|    |.|        ||| |||.....|    ..||.|..     .|||     |.|...| .
Zfish   128 PQTQTLPGYTVVQRNYPVGGVPGGATLPAGLQSNNQPPVQLVLIQEGAGYPVQNTLPNPLPQGKS 192

  Fly   143 PPNAFGGY--------PPGQ-------PQQPIVTQPGMGPGMGPGMAPQGGPAGDWMSIPTGIPN 192
            ||:.....        ||.|       |..|...|....|.:.|.:...|               
Zfish   193 PPSTSSDAELQQQNQPPPAQLITNQCDPNNPAQVQAYPAPAVPPVILTYG--------------- 242

  Fly   193 CPRGLEYLTTIDQLLVKQKVELLEAFTGFETNNKFTIKNALGQKVYFAAEDNDCCTRNCCGPARP 257
            .|.||||||.:||:||:||::.::..|.::.:|::.|||::||:||...|::||..|:..|....
Zfish   243 IPPGLEYLTQVDQVLVRQKIQCIKILTCYQPSNQYEIKNSIGQEVYRVKEESDCFARSVLGSIHN 307

  Fly   258 FDMRVFDNFQQEVIHMHRPLACSSCLFPCCLQSIEVSAPPGNVIGTIEQEWSICSPSFRILNHVG 322
            |.:|:.::..||||.|.:|:       .|.||.|.:.||||..||.::|:||..:|.|.::....
Zfish   308 FKLRIENSLGQEVIQMEKPM-------QCYLQEIAIQAPPGITIGYVKQDWSFLNPKFSVIGPNN 365

  Fly   323 DTVMRIEGPFCTFSLCGDVEFNVVSLT-GEKIGKISKQWSGLAREIFTDADFFGINFPLDLDVRM 386
            :..:.|.|||..|..|.:|.|.|.||. |:.||:|.|:.|......|.|...|.|.|||||||::
Zfish   366 EVQLAIHGPFLPFDCCSEVIFEVKSLLYGQTIGRIIKEQSSFISTFFADDSNFRIEFPLDLDVKI 430

  Fly   387 KAVLLGATFLIDAMFFEKAG 406
            |||||||.||||.:|:.|.|
Zfish   431 KAVLLGACFLIDTIFYNKNG 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scramb1NP_648389.3 Sox_C_TAD <61..>129 CDD:288887 26/106 (25%)
Scramblase 184..404 CDD:252175 90/220 (41%)
si:dkey-62k3.6XP_017212512.1 LOR 236..448 CDD:295149 92/233 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1015148at2759
OrthoFinder 1 1.000 - - FOG0000205
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23248
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X164
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
55.020

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