DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scramb1 and plscr5

DIOPT Version :9

Sequence 1:NP_648389.3 Gene:scramb1 / 326186 FlyBaseID:FBgn0052056 Length:416 Species:Drosophila melanogaster
Sequence 2:XP_017949572.1 Gene:plscr5 / 100494447 XenbaseID:XB-GENE-6045015 Length:225 Species:Xenopus tropicalis


Alignment Length:215 Identity:104/215 - (48%)
Similarity:140/215 - (65%) Gaps:1/215 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 PRGLEYLTTIDQLLVKQKVELLEAFTGFETNNKFTIKNALGQKVYFAAEDNDCCTRNCCGPARPF 258
            |.|||:|:.:.|:::.|:.|||..|.|.|.:||:.||:..||:.|||.|:|:...:|.|||.|||
 Frog     9 PPGLEHLSKMQQIIIHQQTELLGVFLGTEKSNKYEIKDNFGQRFYFATEENEYFNKNFCGPVRPF 73

  Fly   259 DMRVFDNFQQEVIHMHRPLACSSCLFPCCLQSIEVSAPPGNVIGTIEQEWSICSPSFRILNHVGD 323
            .||:.::..||||.:.|||.|..|.|||.||.:||.||.|...|.|.|:|....|.|.|.|...:
 Frog    74 TMRISNSRGQEVITIIRPLRCIHCCFPCYLQELEVQAPLGTTAGFIVQKWDPLLPKFIIQNESKE 138

  Fly   324 TVMRIEGPFCTFSLCGDVEFNVVSLTGEK-IGKISKQWSGLAREIFTDADFFGINFPLDLDVRMK 387
            .|:.:.||:.|.|..|||.|.|.:|..|. ||||.|.|||...::||:||.|||.||:||||::|
 Frog   139 DVLIVIGPYLTSSCFGDVIFEVKTLNEESTIGKICKYWSGFVNDVFTNADNFGIEFPVDLDVKLK 203

  Fly   388 AVLLGATFLIDAMFFEKAGN 407
            |.|:|..||||.|:||::.:
 Frog   204 AALIGTCFLIDLMYFEQSSD 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scramb1NP_648389.3 Sox_C_TAD <61..>129 CDD:288887
Scramblase 184..404 CDD:252175 103/210 (49%)
plscr5XP_017949572.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1015148at2759
OrthoFinder 1 1.000 - - FOG0000205
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X164
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.