DRSC/TRiP Functional Genomics Resources

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Protein Alignment scramb1 and plscr2

DIOPT Version :10

Sequence 1:NP_648389.3 Gene:scramb1 / 326186 FlyBaseID:FBgn0052056 Length:416 Species:Drosophila melanogaster
Sequence 2:XP_012818771.1 Gene:plscr2 / 100489273 XenbaseID:XB-GENE-5819744 Length:283 Species:Xenopus tropicalis


Alignment Length:295 Identity:161/295 - (54%)
Similarity:193/295 - (65%) Gaps:27/295 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 GQPHYGGGAPPPQ--AFGGYPPGPAGPGGPPNAFGGYPPG----QPQQPIVTQPGMGPGMGPGMA 174
            |.|..|.|.|..|  |:.||||       ..|.:|..|||    ||.|.:.||||:     ||.|
 Frog     6 GNPGLGYGNPEFQNAAYPGYPP-------QQNPYGYPPPGPYQFQPGQAMPTQPGV-----PGAA 58

  Fly   175 PQGGPAGDWMSIPTGIPNCPRGLEYLTTIDQLLVKQKVELLEAFTGFETNNKFTIKNALGQKVYF 239
                    ||.||...||||.|||||:.|||:||.|:|||||..||||||||:.|||:|||:|||
 Frog    59 --------WMPIPAANPNCPPGLEYLSQIDQILVHQQVELLEVLTGFETNNKYEIKNSLGQRVYF 115

  Fly   240 AAEDNDCCTRNCCGPARPFDMRVFDNFQQEVIHMHRPLACSSCLFPCCLQSIEVSAPPGNVIGTI 304
            |||:|||||||.|||:|||.|.:.||..:||:.:||||.||:|.||||||.:||.||||.|:|.:
 Frog   116 AAEENDCCTRNYCGPSRPFAMTIVDNTGREVMKLHRPLRCSACCFPCCLQKLEVQAPPGTVVGYV 180

  Fly   305 EQEWSICSPSFRILNHVGDTVMRIEGPFCTFSLCGDVEFNVVSL-TGEKIGKISKQWSGLAREIF 368
            .|.|..|.|.|.|.:.....|::|.||......|.||.|.|:|: ....:|:|||||:|..:|||
 Frog   181 VQNWHPCLPKFTIQDEREQGVLKISGPCIPCRCCTDVNFEVMSVDESSVVGRISKQWAGSVKEIF 245

  Fly   369 TDADFFGINFPLDLDVRMKAVLLGATFLIDAMFFE 403
            ||.|.|||.||:|||::.|||||||.||||.||||
 Frog   246 TDTDNFGIQFPMDLDIKTKAVLLGACFLIDFMFFE 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scramb1NP_648389.3 PHA03378 <12..187 CDD:223065 28/76 (37%)
Scramblase 184..404 CDD:252175 134/221 (61%)
plscr2XP_012818771.1 Scramblase 60..280 CDD:252175 132/219 (60%)

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