DRSC/TRiP Functional Genomics Resources

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Protein Alignment scramb1 and LOC100489081

DIOPT Version :10

Sequence 1:NP_648389.3 Gene:scramb1 / 326186 FlyBaseID:FBgn0052056 Length:416 Species:Drosophila melanogaster
Sequence 2:XP_031755478.1 Gene:LOC100489081 / 100489081 XenbaseID:XB-GENE-29079563 Length:237 Species:Xenopus tropicalis


Alignment Length:273 Identity:72/273 - (26%)
Similarity:116/273 - (42%) Gaps:64/273 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 PPG--PAGPGGPPNAFGGYPPGQPQQPIVTQPGMGPGMGPGMAPQGGPAGDWMSIPTGIPNCPRG 196
            |||  ...|..||:.   |||       |.|.....|..||.                       
 Frog    13 PPGYNTIAPYAPPDQ---YPP-------VAQHLATTGASPGS----------------------- 44

  Fly   197 LEYLTTIDQLLVKQKVELLEAFTGFETNNKFTIKNALGQKVYFAAEDNDCCTRNCCGPARPFDMR 261
             |.|..|:||.:::|.::.:.:     ...|.:.|:.||:::.|.:     :.:.|||.  .|:.
 Frog    45 -ELLAQINQLSIREKFKVSQGW-----GRSFDVLNSDGQRIFQAEQ-----SAHFCGPV--LDVN 96

  Fly   262 VFDNFQQEVIHMHRPLACSSCLFPCCLQSIEVSAPPGNVIGTIEQEWSICSPSFRILNHVGDTVM 326
            :.||...||:.......||      |.:.:||..|.|..:|.:...|:.......|:|....||:
 Frog    97 IRDNSGNEVMEFIDTCKCS------CSREMEVYWPRGFPVGYVTLHWNQMVTHMSIMNSAKQTVL 155

  Fly   327 RIEGPFCTFSLCGDVEFNVVSLTGEKIGKISKQWSGLAREIFTDADFFGINFPLDLDVRMKAVLL 391
            .|.||.....:.|:..|.|.|...:.:       .|:.|.   :.:.|.::|||||:|.:|||||
 Frog   156 LIIGPSFRSGIFGNSCFEVKSTDEQHV-------VGVIRH---ENESFSVSFPLDLEVAIKAVLL 210

  Fly   392 GATFLIDAMFFEK 404
            ||:|.:||:.:::
 Frog   211 GASFYLDAIIYQQ 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scramb1NP_648389.3 PHA03378 <12..187 CDD:223065 14/54 (26%)
Scramblase 184..404 CDD:252175 58/219 (26%)
LOC100489081XP_031755478.1 LOR 38..217 CDD:470445 59/230 (26%)

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