DRSC/TRiP Functional Genomics Resources

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Protein Alignment scramb1 and plscr1

DIOPT Version :9

Sequence 1:NP_648389.3 Gene:scramb1 / 326186 FlyBaseID:FBgn0052056 Length:416 Species:Drosophila melanogaster
Sequence 2:XP_031757431.1 Gene:plscr1 / 100216165 XenbaseID:XB-GENE-967763 Length:341 Species:Xenopus tropicalis


Alignment Length:393 Identity:181/393 - (46%)
Similarity:221/393 - (56%) Gaps:84/393 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 GFQPNAPPAEGFGYPPPTGGHNAPYPPA--PGHPQPPPPTNYGFMPGPQPAGYAPVPQMPPYGEA 80
            |.:||  |..|:|        |..||.|  ||:  |||...||:    |||||||........:.
 Frog    28 GNEPN--PNSGYG--------NQGYPGADYPGY--PPPQNPYGY----QPAGYAPAGYQTAGAQV 76

  Fly    81 PPYGAGQPPYMGGPGGQPPYAGGPGGQPPYVGGPGGQPHYGGGAPPPQAFGGYPPGPAGPGGPPN 145
            ||   |.||        .||.|.|           ||.::|                        
 Frog    77 PP---GYPP--------GPYQGQP-----------GQANFG------------------------ 95

  Fly   146 AFGGYPPGQPQQPIVTQPGMGPGMGPGMAPQGGPAGDWMSIPTGIPNCPRGLEYLTTIDQLLVKQ 210
            |:|| |...|.||                  |.||..||..|..|||||.||||||.|||:||.|
 Frog    96 AYGG-PHAVPNQP------------------GAPAAAWMPAPAPIPNCPPGLEYLTQIDQILVHQ 141

  Fly   211 KVELLEAFTGFETNNKFTIKNALGQKVYFAAEDNDCCTRNCCGPARPFDMRVFDNFQQEVIHMHR 275
            :|||||..||||||||:.|||:|||:||||||:|||||||||||:|||.|.:.||..|||:.:||
 Frog   142 QVELLEVLTGFETNNKYEIKNSLGQRVYFAAEENDCCTRNCCGPSRPFSMTIVDNAGQEVMKLHR 206

  Fly   276 PLACSSCLFPCCLQSIEVSAPPGNVIGTIEQEWSICSPSFRILNHVGDTVMRIEGPFCTFSLCGD 340
            |..||:|.||||||.:||.||||..:|.:.|.|..|.|.|.|.:.....:::|:||......|.|
 Frog   207 PCRCSACCFPCCLQKLEVQAPPGTTVGYVIQNWHPCLPKFTIQDEREQGILKIKGPCIPCRCCAD 271

  Fly   341 VEFNVVSL-TGEKIGKISKQWSGLAREIFTDADFFGINFPLDLDVRMKAVLLGATFLIDAMFFEK 404
            |:|.:.|: ....:|:|:|||:|..:|.|||||.|||.||:||||::|||||||.||||.||||:
 Frog   272 VKFEIKSMDESAVVGRITKQWTGFVKEAFTDADNFGIQFPMDLDVKIKAVLLGACFLIDFMFFEQ 336

  Fly   405 AGN 407
            :.|
 Frog   337 SQN 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scramb1NP_648389.3 Sox_C_TAD <61..>129 CDD:288887 19/67 (28%)
Scramblase 184..404 CDD:252175 132/220 (60%)
plscr1XP_031757431.1 Scramblase 123..336 CDD:252175 128/212 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 289 1.000 Domainoid score I1540
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H41418
Inparanoid 1 1.050 327 1.000 Inparanoid score I2430
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1015148at2759
OrthoFinder 1 1.000 - - FOG0000205
OrthoInspector 1 1.000 - - mtm9553
Panther 1 1.100 - - LDO PTHR23248
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1891
SonicParanoid 1 1.000 - - X164
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.190

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