DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG31988 and fhl3a

DIOPT Version :10

Sequence 1:NP_610098.1 Gene:CG31988 / 326182 FlyBaseID:FBgn0051988 Length:178 Species:Drosophila melanogaster
Sequence 2:XP_021330031.1 Gene:fhl3a / 567097 ZFINID:ZDB-GENE-030131-4741 Length:279 Species:Danio rerio


Alignment Length:174 Identity:53/174 - (30%)
Similarity:84/174 - (48%) Gaps:5/174 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CHKCQEAI--TKRMITALGKTWHPEHFLCHHCDEQILDATFNVQSGEPVCNKCFVERYTYTCAGC 69
            |.:|:|.|  ..|.:....:.:|...|.|..||..:.|..|..|....:||.|:...::..|..|
Zfish    40 CDECKELIGHDSRELFYEDRHYHEHCFRCFRCDRSLADEPFTSQDDALLCNDCYCNEFSSKCVAC 104

  Fly    70 KKPILEKT--ICAMGESWHEDCFCCGGACKKPLANQTFYERDGKPYCKKDYEDLFAARCAKCEKP 132
            .|.::..|  :...|.:|||.||.| .:|::|:.:::|.......||...||:.||.||.:|::.
Zfish   105 DKTVMPGTRKLEYAGSTWHEGCFIC-NSCQQPIGSKSFIPDKDDHYCVPCYENKFAPRCTRCKQA 168

  Fly   133 ITDSAVLAMNVKWHRDCFRCNKCENPITSQTFTIDGDKPVCPAC 176
            :....|...:..||::||.|..|:..:..|.||...|.|.|..|
Zfish   169 LAKGGVTYRDEPWHKECFVCTSCKVQLAGQHFTSRDDSPYCIKC 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31988NP_610098.1 LIM 126..176 CDD:259829 15/49 (31%)
LIM 7..58 CDD:413332 15/52 (29%)
LIM 66..118 CDD:413332 16/53 (30%)
fhl3aXP_021330031.1 LIM <5..33 CDD:413332
LIM1_FHL3 36..94 CDD:188807 16/53 (30%)
LIM2_FHL3 98..155 CDD:188811 16/57 (28%)
LIM3_FHL 162..213 CDD:188732 16/51 (31%)
LIM4_FHL3 221..276 CDD:188818
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.