DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31988 and lims1

DIOPT Version :10

Sequence 1:NP_610098.1 Gene:CG31988 / 326182 FlyBaseID:FBgn0051988 Length:178 Species:Drosophila melanogaster
Sequence 2:XP_021335295.1 Gene:lims1 / 554019 ZFINID:ZDB-GENE-050522-236 Length:345 Species:Danio rerio


Alignment Length:172 Identity:57/172 - (33%)
Similarity:83/172 - (48%) Gaps:3/172 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VCHKCQEAITKRMITALGKTWHPEHFLCHHCDEQILDATFNVQSGEPVCNKCFVERYTYTCAGCK 70
            :|.||...|.::.:......:||:||.|.:|.:: |.|......||..|..|..:.....|..|:
Zfish   145 ICQKCHAIIEEQPLIFKNDPYHPDHFNCSNCGKE-LTADARELKGELYCLPCHDKMGVPICGACR 208

  Fly    71 KPILEKTICAMGESWHEDCFCCGGACKKPLANQTFYERDGKPYCKKDYEDLFAARCAKCEKPITD 135
            :||..:.:.|||:.||.:.|.| ..|:||......|||.|..||:..|..||...|..|.:.|..
Zfish   209 RPIEGRVVNAMGKQWHVEHFVC-AKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCYHCNRVIEG 272

  Fly   136 SAVLAMNVKWHRDCFRCNKCENPITSQTFTIDGD-KPVCPAC 176
            ..|.|:|..|..:||.|:.|...:|.:...::.| ||||..|
Zfish   273 DVVSALNKAWCVNCFSCSTCNTKLTLKDRFVEVDLKPVCKHC 314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31988NP_610098.1 LIM 126..176 CDD:259829 17/50 (34%)
LIM 7..58 CDD:413332 15/50 (30%)
LIM 66..118 CDD:413332 20/51 (39%)
lims1XP_021335295.1 LIM1_PINCH 21..79 CDD:188717
LIM2_PINCH 82..133 CDD:188718
LIM3_PINCH 146..196 CDD:188719 15/50 (30%)
LIM4_PINCH 202..255 CDD:188720 20/53 (38%)
LIM5_PINCH 263..316 CDD:188721 18/52 (35%)
Blue background indicates that the domain is not in the aligned region.

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