DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31988 and pdlim5

DIOPT Version :10

Sequence 1:NP_610098.1 Gene:CG31988 / 326182 FlyBaseID:FBgn0051988 Length:178 Species:Drosophila melanogaster
Sequence 2:XP_012817118.2 Gene:pdlim5 / 548530 XenbaseID:XB-GENE-854114 Length:884 Species:Xenopus tropicalis


Alignment Length:174 Identity:65/174 - (37%)
Similarity:91/174 - (52%) Gaps:3/174 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 TESIVCHKCQEAITKRMITALGKTWHPEHFLCHHCDEQILDATFNVQSGEPVCNKCFVERYTYTC 66
            |.:.:|..|.:.|....:.||||:||||.|.|.||...:.:..|..:.|...|..|:.:.:...|
 Frog   703 TRTPMCAICNKVIRGPFLLALGKSWHPEEFNCAHCKSSMAEMGFVEEKGGLYCEICYEKLFAPEC 767

  Fly    67 AGCKKPILEKTICAMGESWHEDCFCCGGACKKPLANQTFYERDGKPYCKKDYEDLFAARCAKCEK 131
            |.|::.||.:.|.|:.::||..||.| .||:.|:.|..|:..||:|||:.||..||...|..||.
 Frog   768 ARCQRKILGEVINALKQTWHVSCFVC-VACQTPIRNSVFHLEDGEPYCETDYYSLFGTICHGCEF 831

  Fly   132 PIT--DSAVLAMNVKWHRDCFRCNKCENPITSQTFTIDGDKPVC 173
            ||.  |..:.|:...||..||.|..|...:..|||....||.:|
 Frog   832 PIEAGDRFLEALGHTWHNTCFVCTICCENLEGQTFFSKKDKLLC 875

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31988NP_610098.1 LIM 126..176 CDD:259829 19/50 (38%)
LIM 7..58 CDD:413332 18/50 (36%)
LIM 66..118 CDD:413332 22/51 (43%)
pdlim5XP_012817118.2 PDZ_PDLIM-like 5..83 CDD:467235
PRK12323 <80..216 CDD:481241
DUF4749 208..321 CDD:464948
LIM1_ENH 708..759 CDD:188837 18/50 (36%)
LIM2_Enigma_like 767..818 CDD:188748 22/51 (43%)
LIM3_ENH 826..880 CDD:188843 19/50 (38%)
Blue background indicates that the domain is not in the aligned region.

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