DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31988 and Pdlim1

DIOPT Version :9

Sequence 1:NP_001286122.1 Gene:CG31988 / 326182 FlyBaseID:FBgn0051988 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_059061.1 Gene:Pdlim1 / 54133 RGDID:68324 Length:327 Species:Rattus norvegicus


Alignment Length:58 Identity:14/58 - (24%)
Similarity:20/58 - (34%) Gaps:0/58 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VCHKCQEAITKRMITALGKTWHPEHFLCHHCDEQILDATFNVQSGEPVCNKCFVERYT 63
            :|.||...|....:.......|||.::|..|...:..........:..|.|...||.|
  Rat   257 ICDKCGTGIVGVFVKLRDHHPHPECYVCTDCGINLKQKGHFFVGDQIYCEKHARERVT 314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31988NP_001286122.1 LIM 7..58 CDD:295319 11/50 (22%)
LIM 66..118 CDD:295319
LIM 126..176 CDD:259829
Pdlim1NP_059061.1 PDZ_signaling 5..81 CDD:238492
DUF4749 136..228 CDD:292558
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 161..186
LIM_CLP36 258..309 CDD:188832 11/50 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1703
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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