DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31988 and LIMS1

DIOPT Version :10

Sequence 1:NP_610098.1 Gene:CG31988 / 326182 FlyBaseID:FBgn0051988 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_001358423.1 Gene:LIMS1 / 3987 HGNCID:6616 Length:398 Species:Homo sapiens


Alignment Length:234 Identity:65/234 - (27%)
Similarity:89/234 - (38%) Gaps:65/234 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CHKCQEAITKRMITALGKTWHPEHFLCHHCDEQILDATFNVQS-----------------GEPVC 54
            ||:|.|.|..|:|.|:..:||||.|.|..|.|.:.|..|...:                 |:.:|
Human   133 CHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYIC 197

  Fly    55 NKCFV-------------------------------------ERYTY---------TCAGCKKPI 73
            .||..                                     |.|..         .|..|::||
Human   198 QKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPI 262

  Fly    74 LEKTICAMGESWHEDCFCCGGACKKPLANQTFYERDGKPYCKKDYEDLFAARCAKCEKPITDSAV 138
            ..:.:.|||:.||.:.|.| ..|:||......|||.|..||:..|..||...|..|.:.|....|
Human   263 EGRVVNAMGKQWHVEHFVC-AKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVV 326

  Fly   139 LAMNVKWHRDCFRCNKCENPITSQTFTIDGD-KPVCPAC 176
            .|:|..|..:||.|:.|...:|.:...::.| ||||..|
Human   327 SALNKAWCVNCFACSTCNTKLTLKDKFVEIDLKPVCKHC 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31988NP_610098.1 LIM 126..176 CDD:259829 17/50 (34%)
LIM 7..58 CDD:413332 21/67 (31%)
LIM 66..118 CDD:413332 20/51 (39%)
LIMS1NP_001358423.1 LIM1_PINCH 72..130 CDD:188717
LIM2_PINCH 133..184 CDD:188718 18/50 (36%)
LIM3_PINCH 197..247 CDD:188719 5/49 (10%)
LIM4_PINCH 253..306 CDD:188720 20/53 (38%)
LIM5_PINCH 314..367 CDD:188721 18/52 (35%)
Blue background indicates that the domain is not in the aligned region.

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