DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31988 and Fhl3

DIOPT Version :10

Sequence 1:NP_610098.1 Gene:CG31988 / 326182 FlyBaseID:FBgn0051988 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_001101449.1 Gene:Fhl3 / 313582 RGDID:1307180 Length:288 Species:Rattus norvegicus


Alignment Length:174 Identity:59/174 - (33%)
Similarity:90/174 - (51%) Gaps:5/174 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CHKCQEAI--TKRMITALGKTWHPEHFLCHHCDEQILDATFNVQSGEPVCNKCFVERYTYTCAGC 69
            |.:||:.|  ..|.:....:.:|...|.|..|...:.|..|..|..|.:||:|:...::..|:.|
  Rat    40 CAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNECYCTAFSSQCSAC 104

  Fly    70 KKPIL--EKTICAMGESWHEDCFCCGGACKKPLANQTFYERDGKPYCKKDYEDLFAARCAKCEKP 132
            .:.::  .:.:...|::|||.||.|.| |::||.:::|....|..||...||:.||.|||:|.|.
  Rat   105 GETVMPGSRKLEYGGQTWHEHCFLCSG-CEQPLGSRSFVPDKGAHYCVPCYENKFAPRCARCSKT 168

  Fly   133 ITDSAVLAMNVKWHRDCFRCNKCENPITSQTFTIDGDKPVCPAC 176
            :|...|...:..|||:|..|..|:.|:..|.||...|.|.|.||
  Rat   169 LTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVAC 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31988NP_610098.1 LIM 126..176 CDD:259829 19/49 (39%)
LIM 7..58 CDD:413332 15/52 (29%)
LIM 66..118 CDD:413332 17/53 (32%)
Fhl3NP_001101449.1 LIM <5..33 CDD:413332
LIM1_FHL3 36..94 CDD:188807 16/53 (30%)
LIM2_FHL3 98..155 CDD:188811 17/57 (30%)
LIM3_FHL 162..213 CDD:188732 21/51 (41%)
LIM 221..284 CDD:413332
Blue background indicates that the domain is not in the aligned region.

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