DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31988 and rga1

DIOPT Version :10

Sequence 1:NP_610098.1 Gene:CG31988 / 326182 FlyBaseID:FBgn0051988 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_596743.1 Gene:rga1 / 2541022 PomBaseID:SPBC3F6.05 Length:1150 Species:Schizosaccharomyces pombe


Alignment Length:182 Identity:55/182 - (30%)
Similarity:80/182 - (43%) Gaps:15/182 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTESIVCHKCQEAITKRMITALGKTWHPEHFLCHHCDEQIL-------DATFNVQSGEPVCNKCF 58
            ::.|.:|..|.:.|:.:.:.|||..:|.|.|.||.|:..:.       |.|.|.|  .|:|...:
pombe   110 VSSSKICASCGQVISGQYVRALGNIYHLECFRCHDCNSLVASKFFPIDDPTLNKQ--VPLCETDY 172

  Fly    59 VERYTYTCAGCKKPILEKTICAMGESWHEDCFCCGGACKKPLA-NQTFYERDGKPYCKKDYEDLF 122
            ..|....||.|...:....|.|:.:.:|.:.|.| ..|..... |.::||.:||.||...|..||
pombe   173 FRRLDLLCASCGMALRGYYITALNKKFHIEHFTC-SLCYTVFGPNDSYYEYEGKVYCHYHYSTLF 236

  Fly   123 AARCAKCEKPITDSAV----LAMNVKWHRDCFRCNKCENPITSQTFTIDGDK 170
            ||||..|:.||....|    ..::..||..|....|..|....|..:|:..|
pombe   237 AARCCGCDGPILRQFVEVYRNGVSQNWHVPCHMIYKFWNVKLCQKTSIETSK 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31988NP_610098.1 LIM 126..176 CDD:259829 13/49 (27%)
LIM 7..58 CDD:413332 18/57 (32%)
LIM 66..118 CDD:413332 16/52 (31%)
rga1NP_596743.1 LIM1_Lrg1p_like 116..172 CDD:188777 18/57 (32%)
LIM2_Lrg1p_like 180..232 CDD:188778 16/52 (31%)
LIM 485..539 CDD:413332
RhoGAP_fLRG1 835..1044 CDD:239862
Blue background indicates that the domain is not in the aligned region.

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