DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31988 and Lims2

DIOPT Version :9

Sequence 1:NP_001286122.1 Gene:CG31988 / 326182 FlyBaseID:FBgn0051988 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_001366066.1 Gene:Lims2 / 225341 MGIID:2385067 Length:341 Species:Mus musculus


Alignment Length:172 Identity:52/172 - (30%)
Similarity:84/172 - (48%) Gaps:3/172 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VCHKCQEAITKRMITALGKTWHPEHFLCHHCDEQILDATFNVQSGEPVCNKCFVERYTYTCAGCK 70
            :|.:|..||.::.:......:||:||.|.:|.:::......:: ||..|..|..:.....|..|:
Mouse   139 ICQRCHLAIDEQPLMFKNDPYHPDHFSCSNCGKELTSDARELK-GELYCLPCHDKMGIPICGACR 202

  Fly    71 KPILEKTICAMGESWHEDCFCCGGACKKPLANQTFYERDGKPYCKKDYEDLFAARCAKCEKPITD 135
            :||..:.:.|:|:.||.:.|.| ..|:||......||:.|..||:..|..||...|..|...|..
Mouse   203 RPIEGRVVNALGKQWHVEHFVC-AKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEG 266

  Fly   136 SAVLAMNVKWHRDCFRCNKCENPITSQTFTIDGD-KPVCPAC 176
            ..|.|::..|..:||.|:.|...:|.:...::.| ||||..|
Mouse   267 DVVSALSKAWCVNCFSCSTCNMKLTLKNKFVEFDMKPVCKRC 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31988NP_001286122.1 LIM 7..58 CDD:295319 13/50 (26%)
LIM 66..118 CDD:295319 18/51 (35%)
LIM 126..176 CDD:259829 16/50 (32%)
Lims2NP_001366066.1 LIM1_PINCH 15..73 CDD:188717
LIM2_PINCH 76..127 CDD:188718
LIM3_PINCH 140..190 CDD:188719 13/50 (26%)
LIM4_PINCH 196..249 CDD:188720 18/53 (34%)
LIM5_PINCH 257..310 CDD:188721 17/52 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1593918at2759
OrthoFinder 1 1.000 - - FOG0000055
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.010

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