DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31988 and PDLIM5

DIOPT Version :9

Sequence 1:NP_001286122.1 Gene:CG31988 / 326182 FlyBaseID:FBgn0051988 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_001243355.2 Gene:PDLIM5 / 10611 HGNCID:17468 Length:625 Species:Homo sapiens


Alignment Length:170 Identity:65/170 - (38%)
Similarity:89/170 - (52%) Gaps:3/170 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VCHKCQEAITKRMITALGKTWHPEHFLCHHCDEQILDATFNVQSGEPVCNKCFVERYTYTCAGCK 70
            :|..|.:.|....:.||||:||||.|.|.||...:....|..:.|...|..|:.:.:...|..|:
Human   448 MCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFAPECGRCQ 512

  Fly    71 KPILEKTICAMGESWHEDCFCCGGACKKPLANQTFYERDGKPYCKKDYEDLFAARCAKCEKPIT- 134
            :.||.:.|.|:.::||..||.| .||.||:.|..|:..||:|||:.||..||...|..||.||. 
Human   513 RKILGEVISALKQTWHVSCFVC-VACGKPIRNNVFHLEDGEPYCETDYYALFGTICHGCEFPIEA 576

  Fly   135 -DSAVLAMNVKWHRDCFRCNKCENPITSQTFTIDGDKPVC 173
             |..:.|:...||..||.|:.|...:..|||....|||:|
Human   577 GDMFLEALGYTWHDTCFVCSVCCESLEGQTFFSKKDKPLC 616

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31988NP_001286122.1 LIM 7..58 CDD:295319 18/50 (36%)
LIM 66..118 CDD:295319 22/51 (43%)
LIM 126..176 CDD:259829 20/50 (40%)
PDLIM5NP_001243355.2 PDZ_signaling 10..82 CDD:238492
DUF4749 105..201 CDD:406377
LIM1_ENH 449..500 CDD:188837 18/50 (36%)
LIM 508..559 CDD:413332 22/51 (43%)
LIM3_ENH 567..621 CDD:188843 20/50 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1703
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000055
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.900

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