DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaD and SCARB1

DIOPT Version :9

Sequence 1:NP_724087.1 Gene:ninaD / 326160 FlyBaseID:FBgn0002939 Length:513 Species:Drosophila melanogaster
Sequence 2:NP_001354910.1 Gene:SCARB1 / 949 HGNCID:1664 Length:552 Species:Homo sapiens


Alignment Length:490 Identity:130/490 - (26%)
Similarity:230/490 - (46%) Gaps:44/490 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 GVTQQKAWVFG----LGTFFAVSGLLAIICWPGFIDSGIMKALPLTPTSKTFEKWEELPIPVYVY 67
            |.:.:..|..|    .|...||.|.:.|:..|..|...::|.:.:.|:|.:|..|:|:|||.|:.
Human     2 GCSAKARWAAGALGVAGLLCAVLGAVMIVMVPSLIKQQVLKNVRIDPSSLSFNMWKEIPIPFYLS 66

  Fly    68 MYLWNWTNAADVQANGVKPIFAQLGPYVYREERKKMDLEWHDNGTVTFNPRRTWFWEEELSGGKQ 132
            :|.::..|.::: ..|.||...:.|||||||.|.|.::.:::|.||:|...||:.::...|.|.:
Human    67 VYFFDVMNPSEI-LKGEKPQVRERGPYVYREFRHKSNITFNNNDTVSFLEYRTFQFQPSKSHGSE 130

  Fly   133 TDLITAPHLPSLAASNQMRNSNVFLKFMFNEALNANGGHLFVTHTAAE--WLFESFYDEFLHYAM 195
            :|.|..|::..|.|:..|.|..:.||.:...|....|...|:..|..|  |.::           
Human   131 SDYIVMPNILVLGAAVMMENKPMTLKLIMTLAFTTLGERAFMNRTVGEIMWGYK----------- 184

  Fly   196 TLNNPLVPKIE---------SDHFAWFLNRNGSKDFEGPFTVHTGVGDIKEMGEIKYWKGQNHTG 251
               :|||..|.         .|.|..|...|.|.  .|.|||.|||.:|..:..:..|.|.:...
Human   185 ---DPLVNLINKYFPGMFPFKDKFGLFAELNNSD--SGLFTVFTGVQNISRIHLVDKWNGLSKVD 244

  Fly   252 -WYDGECGRLNGSTTDLFVPDEPKEKALTIFIPDTCRIINLEFTGQSETIQGITGWKYEITPNT- 314
             |:..:|..:||::..::.|....|.:|..:.|:.||.:.|.:. :|...:||..::: :.|.| 
Human   245 FWHSDQCNMINGTSGQMWPPFMTPESSLEFYSPEACRSMKLMYK-ESGVFEGIPTYRF-VAPKTL 307

  Fly   315 FDNGQINGNAKCWCPLERQPDNCPATGATDLGPCADGVPMYLSADHFMYADESYGSTISGYNPNY 379
            |.||.|....:.:||       |..:|..::..|....|::||..||:.||......::|.:||.
Human   308 FANGSIYPPNEGFCP-------CLESGIQNVSTCRFSAPLFLSHPHFLNADPVLAEAVTGLHPNQ 365

  Fly   380 DQNNFYIIMERKMGVPLKVNANVMITLYIEPDSVIDILKGLPSFYAPLFTTASRAEID-EALASE 443
            :.::.::.:....|:|:..:..:.::||::..:.|.....:.....||...|....:: |.|.:.
Human   366 EAHSLFLDIHPVTGIPMNCSVKLQLSLYMKSVAGIGQTGKIEPVVLPLLWFAESGAMEGETLHTF 430

  Fly   444 LRLALNLPAIGRYTGVGFLCLGCILIAVGILLTIK 478
            ....:.:|.:..|.....|.|||:|:.|.::..|:
Human   431 YTQLVLMPKVMHYAQYVLLALGCVLLLVPVICQIR 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaDNP_724087.1 CD36 19..474 CDD:279474 126/468 (27%)
SCARB1NP_001354910.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165148204
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3776
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.876977 Normalized mean entropy S6407
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11923
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X155
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
87.800

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