DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaD and scarb2

DIOPT Version :9

Sequence 1:NP_724087.1 Gene:ninaD / 326160 FlyBaseID:FBgn0002939 Length:513 Species:Drosophila melanogaster
Sequence 2:NP_001016557.1 Gene:scarb2 / 549311 XenbaseID:XB-GENE-948022 Length:483 Species:Xenopus tropicalis


Alignment Length:481 Identity:134/481 - (27%)
Similarity:217/481 - (45%) Gaps:48/481 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 W-VFGLGTFFAVSGLLAII--------CWPGFIDSGIMKALPLTPTSKTFEKWEELPIPVYVYMY 69
            | |||..   |||..|.|:        .:...::..:.:|:.|...|:.||.|...|.|||:..|
 Frog     4 WAVFGTA---AVSVTLLIVSIVLLLTHTFMDIVEGQVKQAIVLKNESEVFEDWANPPPPVYMQFY 65

  Fly    70 LWNWTNAADVQANGVKPIFAQLGPYVYREERKKMDLEWHDNGT-VTFNPRRTWFWEEELS-GGKQ 132
            .:|.||..:| .:|.||...::|||.|||.|.:.::.:..||| |:....:|:.:|.|.| |..:
 Frog    66 FFNVTNPLEV-LSGEKPFVDEIGPYTYREYRPRENITFSVNGTEVSAVTPKTYVFEPEKSIGDPK 129

  Fly   133 TDLITAPHLPSLAASNQMRNSNVFLKFMFNEALNANGGHLFVTHTAAE--WLFESFYDEFLHYAM 195
            .|||...::|.:......::|::...|:. .||......:|||.|..|  |.::......||   
 Frog   130 VDLIRTVNIPLVTILEMTKDSSLLRPFII-AALKTYKEGMFVTRTVDELLWGYKDAVLSILH--- 190

  Fly   196 TLNNPLVPKIESDHFAWFLNRNGSKDFEGPFTVHTGVGDIKEMGEIKYWKGQNHTGWYDGE-CGR 259
                |....| ||.|..|...|.:.|  |.:...:|..|..|..:|..||||....|:..| |..
 Frog   191 ----PFKKNI-SDTFGLFYKMNTTDD--GEYIFLSGEKDYLEFTQIAEWKGQKALNWWTTETCNM 248

  Fly   260 LNGSTTDLFVPDEPKEKALTIFIPDTCRIINLEFTGQSETIQGITGWKYEITPNTFDNGQINGNA 324
            :||:....|.|...|:..:.:|..|.||.|...:. .||.|:.|:.:::....:.|.|..:|...
 Frog   249 INGTDGTSFHPLLNKDDTIYMFSSDLCRSIYAVYE-SSENIKDISVFRFSPPASVFANVSVNPQN 312

  Fly   325 KCWCPLERQPDNCPATGATDLGPCADGVPMYLSADHFMYADESYGSTISGYNPNYDQNNFYIIME 389
            |.:|..|   .||..:|..::..|.:|.|:.||:.||..|||:..::|.|..|..:.:..::.:.
 Frog   313 KGFCVPE---GNCLPSGLLNVSICKEGAPIVLSSPHFYQADENVINSIRGMKPVKEHHMTFLDLN 374

  Fly   390 RKMGVPLKVNANVMITLYIEPDSVIDILKGLPSFYAPLFTTASRAEIDEALASELRLAL------ 448
            ...|..::....:.:.:|:...:|..|.:.:.:.:.|:........||:..|..||..|      
 Frog   375 PLTGTLIQAAKRIQVNVYVRKINVYLITQDIQTLFFPVMHLNESVLIDDKSAGRLRSILFQGRVV 439

  Fly   449 -NLPAIGRYTGVG------FLCLGCI 467
             |:|.|  ..|:|      |..|.|:
 Frog   440 ANIPFI--IMGLGIILAFLFTTLSCL 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaDNP_724087.1 CD36 19..474 CDD:279474 130/475 (27%)
scarb2NP_001016557.1 CD36 29..460 CDD:366481 123/448 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11923
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X155
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.110

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