DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaD and scarb2c

DIOPT Version :9

Sequence 1:NP_724087.1 Gene:ninaD / 326160 FlyBaseID:FBgn0002939 Length:513 Species:Drosophila melanogaster
Sequence 2:NP_001352071.1 Gene:scarb2c / 337532 ZFINID:ZDB-GENE-030131-5789 Length:478 Species:Danio rerio


Alignment Length:446 Identity:118/446 - (26%)
Similarity:212/446 - (47%) Gaps:36/446 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 IDSGIMKALPLTPTSKTFEKWEELPIPVYVYMYLWNWTNAADVQANGVKPIFAQLGPYVYREERK 101
            :::.:.:.:.|...::.|..|:..|.|||:..|.:|.||.|:|. :|.||...|:|||.|||.|.
Zfish    35 VNNTVKQQIVLENGTEAFSVWQNPPPPVYMQFYFFNLTNPAEVM-SGDKPSVVQIGPYTYREYRP 98

  Fly   102 KMDLEWHDNGT--VTFNPRRTWFWEEELSGGKQTDLITAPHLPSLAASNQMRNSNVFLKFMFNEA 164
            ..::::.||||  ...|| :|:.:|..:|.|.|.||:...::|::....:.::|  .|..:.::.
Zfish    99 MEEVKFMDNGTRVAAINP-KTYVFEPNMSRGSQDDLVRTVNIPAVTVMEKYKDS--ILARLISDL 160

  Fly   165 LNANGGHLFVTHTAAE--WLFESFYDEFLHYAMTLNNPLVPKIESDHFAWFLNRNGSKDFEGPFT 227
            :.|.|..:|.|....:  |.:|....:.||.       |||   .|||..|..:||: :::. :.
Zfish   161 MKAKGVGVFETFRVGDLLWGYEDPLLKELHM-------LVP---DDHFGLFYKKNGT-EYDS-YV 213

  Fly   228 VHTGVGDIKEMGEIKYWKGQNHTGWYDG-ECGRLNGSTTDLFVPDEPKEKALTIFIPDTCRIINL 291
            :.||..|.::...|..|.||....|:.. ||..:||:....|.|...|...|.||..|.||.:.:
Zfish   214 LLTGKPDYQDFASIDEWNGQRSLNWWSSEECNMINGTDGASFHPIITKADRLYIFSSDLCRSLYV 278

  Fly   292 EFTGQSETIQGITGWKYEITPNTFDNGQINGNAKCWCPLERQPDNCPATGATDLGPCADGVPMYL 356
            ::. ...::||:.|:::....:.|.:..||.:...:|.   .|.:|..:|..:...|..|.|:.:
Zfish   279 QYE-CDVSVQGVPGFRFVPPADVFSSPDINPDNAGFCV---PPGHCLGSGLLNASVCKQGAPIIM 339

  Fly   357 SADHFMYADESYGSTISGYNPNYDQNNFYIIMERKMGVPLKVNANVMITLYIEPDSVIDILKGLP 421
            |:.||..||:.:...|.|..|..:::..:..:....|:.|:....|.:.:|::..|.......:.
Zfish   340 SSPHFYQADQKFVDDIWGMKPIKEEHQTFADINPLTGIVLQGAKRVQVNVYLQQHSSFSQTGKIQ 404

  Fly   422 SFYAPLFTTASRAEIDEALASEL-------RLALNLP----AIGRYTGVGFLCLGC 466
            :...|:......|.|||..|.:|       .:.:|:|    ::|...|:.|:.|.|
Zfish   405 TLVFPVMYINESAFIDEESAKKLHAVVLNANVVINIPFIVISVGILLGIIFIVLMC 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaDNP_724087.1 CD36 19..474 CDD:279474 118/446 (26%)
scarb2cNP_001352071.1 CD36 15..457 CDD:307331 116/441 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X155
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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