DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaD and Scarb1

DIOPT Version :9

Sequence 1:NP_724087.1 Gene:ninaD / 326160 FlyBaseID:FBgn0002939 Length:513 Species:Drosophila melanogaster
Sequence 2:XP_038945027.1 Gene:Scarb1 / 25073 RGDID:2302 Length:516 Species:Rattus norvegicus


Alignment Length:427 Identity:99/427 - (23%)
Similarity:169/427 - (39%) Gaps:76/427 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 PRRTWFWEEELSGGKQTDLITAPHLPSLAASNQMRNSNVFLKFMFNEALNANGGHLFVTHTAAE- 180
            |:|...|.|..|.|.:|       |.....:..|.:....||.:....|...|...|:..|..| 
  Rat   129 PQRGPKWPEASSPGART-------LCLQGGAVMMEDKPTSLKLLMTLGLVTMGQRAFMNRTVGEI 186

  Fly   181 -WLFESFYDEFLHYAMTLNNPLVPKIESDHFAWFLNRNGSKDFEGPFTVHTGVGDIKEMGEIKYW 244
             |.:|..:..||........|:..|     |..|:..|.|.  .|.|||.|||.:..::..:..|
  Rat   187 LWGYEDPFVNFLSKYFPDMFPIKGK-----FGLFVGMNDSS--SGVFTVFTGVQNFSKIHLVDKW 244

  Fly   245 KGQNHTG-WYDGECGRLNGSTTDLFVPDEPKEKALTIFIPDTCRIINLEFTGQSETIQGITGWKY 308
            .|.:... |:..:|..:||:...::.|....|.:|..|.|:.||.:.|.:. :|...:||..:::
  Rat   245 NGLSEVNYWHSEQCNMINGTAGQMWAPFMTPESSLEFFSPEACRSMKLTYQ-ESRVFEGIPTYRF 308

  Fly   309 EITPNTFDNGQINGNAKCWCPLERQPDNCPATGATDLGPCADGVPMYLSADHFMYADESYGSTIS 373
            ......|.||.:....:.:||       |..:|..::..|..|.|::||..||..||......:.
  Rat   309 TAPDTLFANGSVYPPNEGFCP-------CRESGIQNVSTCRFGAPLFLSQPHFYNADPVLSEAVL 366

  Fly   374 GYNPNYDQNNFYIIMERKMGVPLKVNANVMITLY------------IEPDSVIDIL--------- 417
            |.||:..:::.::.:....|:|:..:..:.::||            ||| .|:.:|         
  Rat   367 GLNPDPKEHSLFLDIHPVTGIPMNCSVKMQLSLYIKSVKGVGQTGKIEP-VVLPLLWFEQSGMMG 430

  Fly   418 -KGLPSFYAPLFTTASRAEIDEALASELRLALNLPAIGRYTGVGFLCLGCILIAVGILLTIKRK- 480
             |.|.:||..|                    :.:|.:..|.....|.||.:|:.|.|:..::.: 
  Rat   431 GKTLNTFYTQL--------------------VLMPQVLHYAQYVLLGLGGLLLLVPIIYQLRSQE 475

  Fly   481 -----WYG--QAELDKLALKDNEETPYEPEVPANVVE 510
                 |.|  :...||.|::...|:...|.....|::
  Rat   476 KCFLFWSGSKKGSQDKEAMQAYSESLMSPAAKGTVLQ 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaDNP_724087.1 CD36 19..474 CDD:279474 90/381 (24%)
Scarb1XP_038945027.1 CD36 <148..454 CDD:395898 77/341 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342074
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3776
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11923
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X155
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.850

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