DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ninaD and Scarb2

DIOPT Version :9

Sequence 1:NP_724087.1 Gene:ninaD / 326160 FlyBaseID:FBgn0002939 Length:513 Species:Drosophila melanogaster
Sequence 2:NP_031670.1 Gene:Scarb2 / 12492 MGIID:1196458 Length:478 Species:Mus musculus


Alignment Length:496 Identity:132/496 - (26%)
Similarity:228/496 - (45%) Gaps:44/496 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 CCGVTQQKAWVFGLGTFFAVSGLLAIICWPGFIDSGIMKALPLTPTSKTFEKWEELPIPVYVYMY 69
            ||..|   |....|........||....:...:|..|.|.:.|...:|.|..||:.|:|||:..|
Mouse     4 CCFYT---AGTLSLLLLVTSVTLLVARVFQKAVDQTIEKNMVLQNGTKVFNSWEKPPLPVYIQFY 65

  Fly    70 LWNWTNAADVQANGVKPIFAQLGPYVYREERKKMDLEWHDNG-TVTFNPRRTWFWEEELS-GGKQ 132
            .:|.||..:: ..|..|:..::|||.|||.|.|.::::.:|| |::....:.:.:|...| |...
Mouse    66 FFNVTNPEEI-LQGEIPLLEEVGPYTYRELRNKANIQFGENGTTISAVTNKAYVFERNQSVGDPN 129

  Fly   133 TDLITAPHLPSLAASNQMRNSNVFLKFMFNEALNANGGHLFVTHTAAEWLFESFYDEFLHYAMTL 197
            .|||...::|.|...:..:.:  .|:.:....|.|....|||.||..|.|: .:.||.|    :|
Mouse   130 VDLIRTINIPLLTVVDLAQLT--LLRELIEAMLKAYQQKLFVIHTVHELLW-GYKDEIL----SL 187

  Fly   198 NNPLVPKIESDHFAWFLNRNGSKDFEGPFTVHTGVGDIKEMGEIKYWKGQNHTGWYDGE-CGRLN 261
            .:...|.: |.:|..|..|||:.|  |.:...||..:.....:|..|.|:....|:..: |..:|
Mouse   188 VHIFKPDV-SPNFGLFYERNGTND--GEYVFLTGEDNYLNFSKIVEWNGKTSLDWWTTDTCNMIN 249

  Fly   262 GSTTDLFVPDEPKEKALTIFIPDTCRIINLEFTGQSETIQGITGWKY----EITPNTFDNGQING 322
            |:..|.|.|...|::.|.:|..|.||.:::.|: ..|.::|:..::|    ||..||.:|..   
Mouse   250 GTDGDSFHPLISKDEVLYLFPSDLCRSVHITFS-SFENVEGLPAFRYKVPAEILANTSENAG--- 310

  Fly   323 NAKCWCPLERQPDNCPATGATDLGPCADGVPMYLSADHFMYADESYGSTISGYNPNYDQNNFYII 387
                :|..|   .||..:|..::..|.:|.|:.:|..||..|||.:.|.|.|.:||.:::..::.
Mouse   311 ----FCIPE---GNCMDSGVLNISICKNGAPIIMSFPHFYQADEKFVSAIKGMHPNKEEHESFVD 368

  Fly   388 MERKMGVPLKVNANVMITLYIEP-DSVIDILKGLPSFYAPLFTTASRAEIDEALASELRLALNLP 451
            :....|:.|:......|..|:.. |..:: ...:.:...|:........||:..|::|:..:|..
Mouse   369 INPLTGIILRGAKRFQINTYVRKLDDFVE-TGDIRTMVFPVMYLNESVLIDKETANQLKSVINTT 432

  Fly   452 AIGRYTGVGFLCLGCILIAVGILLTIKRKWY---GQAELDK 489
            .:  .|.:.:     |::|:|:...:...|.   ||..:|:
Mouse   433 LV--VTNIPY-----IIMALGVFFGLVFTWLACRGQGSMDE 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaDNP_724087.1 CD36 19..474 CDD:279474 123/462 (27%)
Scarb2NP_031670.1 CD36 28..455 CDD:279474 121/456 (27%)
Important for interaction with GBA 155..191 13/40 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3776
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11923
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X155
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.920

Return to query results.
Submit another query.