DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rngo and ddi2

DIOPT Version :9

Sequence 1:NP_001285328.1 Gene:rngo / 32616 FlyBaseID:FBgn0030753 Length:458 Species:Drosophila melanogaster
Sequence 2:XP_021332474.1 Gene:ddi2 / 386644 ZFINID:ZDB-GENE-031030-15 Length:914 Species:Danio rerio


Alignment Length:427 Identity:206/427 - (48%)
Similarity:275/427 - (64%) Gaps:32/427 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MKITVTTS----DDKVFCLDVAQDLELENLKALCAMEIGAEVSQIAVIFNGRELSSDKQTLQQCG 61
            |.:||..:    .:..|.|||:.:|||.:..|||.:|.|....:|.:|:..:.|....:.|...|
Zfish     1 MLLTVFCAPRDRSETTFALDVSPELELRDFLALCELESGIPAGEIQIIYAEQPLQDPTRALGNYG 65

  Fly    62 VGDGDFIML---ERRRSANRPVGGNPAISTLDFSNIAVPGTSSGGSPPSRRVQQQGVQQPQFNNL 123
            :.|||.::|   ||.|:..:|.  .|.:..:|||:|||||||||    ..|.:.|..|:|   :.
Zfish    66 LKDGDVLVLRQAERLRAPPQPT--VPGLPRIDFSSIAVPGTSSG----QNRNRPQQAQRP---ST 121

  Fly   124 TDIP-----TTDEFNVNFD--DDPETVRQMFLSSPETLSLLRQYNPSLAEAIDSGDKEKFARLLR 181
            |..|     |:....|:..  |:|..:|.|.|::|..||||::.||.||||:.|||.|:|.::|.
Zfish   122 TQPPPPQATTSPGSGVSPQGLDNPALLRDMLLANPHELSLLKERNPPLAEALLSGDLERFTKVLM 186

  Fly   182 EHITERKRRNEHRMRMLNADPFDEETQRLIAEEIKQKNIQDNMAAAIEYNPEIFGTVTMLYINCK 246
            |...:|.||::.|:::|.|||||.:.|..|.|||:|.||::||..|:|..||.||.|.|||||||
Zfish   187 EQQQDRARRDQERIKLLTADPFDLDAQAKIEEEIRQHNIEENMTIAMEEAPESFGQVVMLYINCK 251

  Fly   247 VNGIPVKAFVDSGAQTTIMSKDCAERCHVNRLIDTRWNGVAKGVGTQPILGRIHMVQLQIENDHL 311
            |||.|||||||||||.||||:.|||||::.||:|.||.|:|||||||.|:||:|:.|:|||.|.|
Zfish   252 VNGHPVKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIGRVHLAQVQIEGDFL 316

  Fly   312 TSSFTVLGQQPMDMLLGLDMLKRHQCLIDLQRNLLIIGTTGTTTPFLPESELPVSARLT----GN 372
            ..||::|..|||||||||||||||||.|||::|:|:||||||.|.||||:|||..|||.    |.
Zfish   317 PCSFSILEDQPMDMLLGLDMLKRHQCSIDLKKNVLLIGTTGTETRFLPEAELPECARLAYGPEGR 381

  Fly   373 SE---DSMEQEAISNAIEQSKRESGGAGGGPNTISPQ 406
            .|   |.:....::.||::|.::|....|  .|.|||
Zfish   382 EEPRPDEIADRELAEAIQRSVQDSDFEDG--KTTSPQ 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rngoNP_001285328.1 UBQ 1..73 CDD:214563 25/78 (32%)
DDI1_N 3..72 CDD:176391 23/75 (31%)
RP_DDI 225..344 CDD:133146 83/118 (70%)
UBA 411..445 CDD:279021
ddi2XP_021332474.1 DDI1_N 3..76 CDD:176391 23/72 (32%)
RP_DDI 231..353 CDD:133146 85/121 (70%)
Herpes_BLLF1 <409..741 CDD:330317 5/10 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170580665
Domainoid 1 1.000 184 1.000 Domainoid score I3356
eggNOG 1 0.900 - - E1_KOG0012
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H121661
Inparanoid 1 1.050 359 1.000 Inparanoid score I2177
OMA 1 1.010 - - QHG54960
OrthoDB 1 1.010 - - D495103at33208
OrthoFinder 1 1.000 - - FOG0002352
OrthoInspector 1 1.000 - - oto40425
orthoMCL 1 0.900 - - OOG6_101685
Panther 1 1.100 - - O PTHR12917
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2086
SonicParanoid 1 1.000 - - X1784
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1716.800

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