DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG31759 and cnot6l

DIOPT Version :10

Sequence 1:NP_723735.2 Gene:CG31759 / 326158 FlyBaseID:FBgn0051759 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001018474.1 Gene:cnot6l / 553665 ZFINID:ZDB-GENE-050522-302 Length:559 Species:Danio rerio


Alignment Length:453 Identity:118/453 - (26%)
Similarity:203/453 - (44%) Gaps:98/453 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 VTPEDIG--YHLKFVVTPGNALGMTG-PVVEKITNSAVQESPGR-------------CPFQDRQR 225
            |.|.::|  :.|:       .||:.| |:.:.|.| ..||..|.             .|.|..||
Zfish   111 VLPYELGRLFQLQ-------TLGLKGNPLSQDILN-LYQEPDGTRKLLNYMLDNLAVHPEQLPQR 167

  Fly   226 HTTNSLSESNEI------RVVSYNLLADLYASSDYAGSTLFSYCPAKYLQIDYRKPLFINEIIGY 284
            ... :|.|.:::      .|:.||:|.|.||:..     |:.|||:..|..:|||...:.||...
Zfish   168 PWI-TLRERDQMMPTAVFTVMCYNVLCDKYATRQ-----LYGYCPSWALNWEYRKKGIMEEITNC 226

  Fly   285 NSDILCLQEVD-QRIFDFDLKEILEQPPYNYHGIMAPKG----------KCAEGVAIFFRNSRFD 338
            ::||:.||||: ::.:.|.|:.:.::   .|.|...||.          |..:|..:||:..:|.
Zfish   227 DADIISLQEVETEQYYTFFLETLKDR---GYDGFFCPKSRAKLVSEQERKHVDGCGVFFKTEKFA 288

  Fly   339 LLDSQILHLGSNIPALPVFESLWNKIKVNAQLAERICERSTTLQTCLLRIK-----------GTD 392
            |:....:....    :.:..|..:::.:|     |:..:.......||.:|           ...
Zfish   289 LVQKHTVEFNQ----VAMANSEGSEVMLN-----RVMTKDNIGVAVLLEVKEDLFAAGLKPPPEK 344

  Fly   393 NYVLVANTHLYFHPDADHIRLLQMGFSMLFVEQ--SIS-KAIKDFNISS----HKNIGLIFCGDF 450
            ..:||||.|:::.|:...::|:|   :|:|:.:  ||: :|....|.||    ..:|.::.|.|.
Zfish   345 QLLLVANAHMHWDPEYSDVKLIQ---TMMFLSELKSIAERASGSINSSSPTSETSSIPIVLCADL 406

  Fly   451 NSVPECGIYKLMTE-QLAEK-----------TLEDWQSNAEQAVSNVELAQPFKMASAY--GAPE 501
            ||:|:.|:.:.::. .:||.           .|.::..|.:....:..:...|::.|||  ....
Zfish   407 NSLPDSGVVEYLSNGGVAENHKDFKELRYSDCLTNFSCNGKNGKPDGSITHSFQLKSAYEGNLMP 471

  Fly   502 YTHYTTLFAGCLDYVFYQNDRFEVLKVV-PLPTEEELKAN--TAIPSAVFPSDHVALVADLKF 561
            ||:||..|.|.:||:|:......||.|: ||.| :.||.|  |..|....||||.:|:|.|::
Zfish   472 YTNYTYDFKGVIDYIFFSKTHMSVLGVLGPLET-QWLKDNNITGCPHPHIPSDHFSLLAQLEY 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31759NP_723735.2 EEP 239..561 CDD:469791 99/367 (27%)
cnot6lNP_001018474.1 Nuclease domain. /evidence=ECO:0000250 1..550 118/453 (26%)
Required for interaction with cnot1, cnot3 and cnot7. /evidence=ECO:0000250 1..148 13/44 (30%)
LRR <32..>133 CDD:443914 8/28 (29%)
leucine-rich repeat 32..52 CDD:275378
leucine-rich repeat 53..75 CDD:275378
leucine-rich repeat 76..98 CDD:275378
leucine-rich repeat 99..121 CDD:275378 3/9 (33%)
leucine-rich repeat 122..133 CDD:275378 5/17 (29%)
Deadenylase_CCR4b 186..533 CDD:197339 99/367 (27%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.