DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31689 and Abca4

DIOPT Version :9

Sequence 1:NP_001259954.1 Gene:CG31689 / 326154 FlyBaseID:FBgn0031449 Length:624 Species:Drosophila melanogaster
Sequence 2:NP_031404.1 Gene:Abca4 / 11304 MGIID:109424 Length:2310 Species:Mus musculus


Alignment Length:349 Identity:92/349 - (26%)
Similarity:150/349 - (42%) Gaps:64/349 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 TFKSGELTAIMGPSGAGKSSLMNILTGLTKSGVSGKIEIG---------KARKLCGYIMQDDHFF 106
            ||...::||.:|.:||||::.::|||||... .||.:.||         ..|:..|...|.:..|
Mouse   952 TFYENQITAFLGHNGAGKTTTLSILTGLLPP-TSGTVLIGGKDIETNLDVVRQSLGMCPQHNILF 1015

  Fly   107 PYFTVEETMLMAATLKISNQCVSLKEKRTLIDYLLNSLKLTKTRQTKCSNLSGGQKKRLSIALEL 171
            .:.||.|.:|..|.||..    |.:|.:..::.:|....|...|..:..:||||.:::||:|:..
Mouse  1016 HHLTVAEHILFYAQLKGR----SWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAF 1076

  Fly   172 IDNPAVLFLDEPTTGLDSSSSFDTIQLLRGLANEGRTIV-CTIHQPSTNIYNLFNLVYVLSAGRC 235
            :.:..|:.|||||:|:|..|......||... ..||||: .|.|....::  |.:.:.::|.||.
Mouse  1077 VGDSKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHMDEADL--LGDRIAIISQGRL 1138

  Fly   236 TYQGTPQNTVMFLSSVGLECPPYHNPADFLLEC-ANGDYGDQTEALAEAAKDIRWRYDQQLMQGE 299
            ...|||.                     ||..| ..|.|    ..|....|:|      |..:|.
Mouse  1139 YCSGTPL---------------------FLKNCFGTGFY----LTLVRKMKNI------QSQRGG 1172

  Fly   300 DADAPSETQVAKFNESQSPGQV-QVQVQKIEIQNMESSKDLTKHTYPPTEYMR------LWLLIG 357
            .....|.|  :|...::.|.:| ::..:::...:::...||..|..|..:.:.      ::||..
Mouse  1173 CEGVCSCT--SKGFSTRCPTRVDEITEEQVLDGDVQELMDLVYHHVPEAKLVECIGQELIFLLPN 1235

  Fly   358 -----RCHLQFFRDWTLTYLKLGI 376
                 |.:...||:...|...||:
Mouse  1236 KNFKQRAYASLFRELEETLADLGL 1259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31689NP_001259954.1 3a01204 15..622 CDD:273361 92/349 (26%)
ABCG_EPDR 26..239 CDD:213180 62/197 (31%)
ABC2_membrane 355..558 CDD:279410 7/27 (26%)
Abca4NP_031404.1 rim_protein 1..2271 CDD:130324 92/349 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 891..910
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1311..1344
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2266..2310
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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