DRSC/TRiP Functional Genomics Resources

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Protein Alignment erm and gfi1b

DIOPT Version :9

Sequence 1:NP_001259891.2 Gene:erm / 326152 FlyBaseID:FBgn0031375 Length:698 Species:Drosophila melanogaster
Sequence 2:XP_002936223.1 Gene:gfi1b / 100489910 XenbaseID:XB-GENE-944426 Length:343 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ermNP_001259891.2 COG5048 <295..461 CDD:227381
C2H2 Zn finger 320..340 CDD:275368
zf-H2C2_2 332..357 CDD:290200
zf-C2H2 346..368 CDD:278523
C2H2 Zn finger 348..368 CDD:275368
zf-H2C2_2 363..385 CDD:290200
C2H2 Zn finger 376..396 CDD:275368
zf-H2C2_2 389..413 CDD:290200
C2H2 Zn finger 404..424 CDD:275368
zf-H2C2_2 416..441 CDD:290200
C2H2 Zn finger 432..452 CDD:275368
C2H2 Zn finger 460..478 CDD:275368
gfi1bXP_002936223.1 COG5048 <76..337 CDD:227381
C2H2 Zn finger 178..199 CDD:275368
PHA00733 <204..252 CDD:177301
C2H2 Zn finger 207..227 CDD:275368
C2H2 Zn finger 235..255 CDD:275368
C2H2 Zn finger 263..283 CDD:275368
zf-H2C2_2 275..300 CDD:372612
C2H2 Zn finger 291..311 CDD:275368
C2H2 Zn finger 319..336 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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