DRSC/TRiP Functional Genomics Resources

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Protein Alignment CDC50 and AT1G54320

DIOPT Version :9

Sequence 1:NP_573128.2 Gene:CDC50 / 32615 FlyBaseID:FBgn0030752 Length:357 Species:Drosophila melanogaster
Sequence 2:NP_564656.1 Gene:AT1G54320 / 841873 AraportID:AT1G54320 Length:349 Species:Arabidopsis thaliana


Alignment Length:357 Identity:146/357 - (40%)
Similarity:197/357 - (55%) Gaps:48/357 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSTQQAEN--------EESAAAK-SKRPSDSAFKQQRLPAWQPVLTARTVLPTFFVIGVLFIPIG 56
            ||:..|.:        :.|||.| ||||..|.|.||.|||.:|:||...|:.||.::.|:|||:|
plant     1 MSSNTASSSAGAAGSGDSSAARKNSKRPKYSKFTQQELPACKPILTPGWVISTFLIVSVIFIPLG 65

  Fly    57 VVLLHLSNTANELIIDY-TKCRRSGGNTTCAEYLEANPGVTCPCEVPFVLPSDFNGVVYMYYGLT 120
            |:.|..|....|::..| |:|..:...|....|::.:....|..::.  :.......:|:||.|.
plant    66 VISLFASQDVVEIVDRYDTECIPAPARTNKVAYIQGDGDKVCNRDLK--VTKRMKQPIYVYYQLE 128

  Fly   121 NYYQNHRRYVKSRDDEQLLGHLSQTPSTDCAPFAYDPDSGKPIAPCGAIANSLFNDTLTLLQGGS 185
            |:|||||||||||.|.||.....:...:.|.|  .|...|:||.|||.||.||||||..|.:...
plant   129 NFYQNHRRYVKSRSDSQLRSTKYENQISACKP--EDDVGGQPIVPCGLIAWSLFNDTYALSRNNV 191

  Fly   186 EIKLLKTGIAWPSDKRVKFRN-------PEGNLNVSLEGFSKPIFWQKGLADLDPENPDNNGFQN 243
            .:.:.|.||||.|||..||.|       .:||:.              |.|.|||..|.:   :.
plant   192 SLAVNKKGIAWKSDKEHKFGNKVFPKNFQKGNIT--------------GGATLDPRIPLS---EQ 239

  Fly   244 EDLIVWMRTAALPSFRKLYRRLNQTNTNYANGLKSGNYTLNIKY--NYPVVSFDGTKRMILSTTS 306
            |||||||||||||:|||||.::.       :.|:.|: |:::|.  ||...||:|.|:::|||||
plant   240 EDLIVWMRTAALPTFRKLYGKIE-------SDLEMGD-TIHVKLNNNYNTYSFNGKKKLVLSTTS 296

  Fly   307 VLGGKNPFLGIAYIVVGAICITLGLALLFIHM 338
            .|||||.||||||:.||.||..|.||...:::
plant   297 WLGGKNDFLGIAYLTVGGICFILALAFTIMYL 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CDC50NP_573128.2 CDC50 67..340 CDD:281387 114/282 (40%)
AT1G54320NP_564656.1 CDC50 70..329 CDD:397450 115/288 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 185 1.000 Domainoid score I995
eggNOG 1 0.900 - - E1_COG5035
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H110703
Inparanoid 1 1.050 232 1.000 Inparanoid score I1130
OMA 1 1.010 - - QHG53602
OrthoDB 1 1.010 - - D889671at2759
OrthoFinder 1 1.000 - - FOG0000577
OrthoInspector 1 1.000 - - otm2961
orthoMCL 1 0.900 - - OOG6_100927
Panther 1 1.100 - - LDO PTHR10926
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X371
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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