DRSC/TRiP Functional Genomics Resources

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Protein Alignment CDC50 and AT1G16360

DIOPT Version :9

Sequence 1:NP_573128.2 Gene:CDC50 / 32615 FlyBaseID:FBgn0030752 Length:357 Species:Drosophila melanogaster
Sequence 2:NP_001320562.1 Gene:AT1G16360 / 838205 AraportID:AT1G16360 Length:350 Species:Arabidopsis thaliana


Alignment Length:341 Identity:137/341 - (40%)
Similarity:191/341 - (56%) Gaps:41/341 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 ESAAAK--SKRPSDSAFKQQRLPAWQPVLTARTVLPTFFVIGVLFIPIGVVLLHLSNTANELIID 72
            |::|||  ||||..|.|.||.|||.:|:||.:.|:.||.|.||:|||:||:.|..|....|::..
plant    17 EASAAKNTSKRPKYSRFTQQELPACKPILTPKWVILTFLVSGVVFIPLGVICLFASQGVIEIVDR 81

  Fly    73 Y-TKCRRSGGNTTCAEYLEANPGVTCPCEVPFVLPSDFNGVVYMYYGLTNYYQNHRRYVKSRDDE 136
            | |.|...........|::......|...:  .:.......||:||.|.|||||||||||||.|.
plant    82 YDTDCIPLSSRDNKVRYIQGLEDKRCNRTI--TVTKTMKNPVYVYYQLENYYQNHRRYVKSRQDG 144

  Fly   137 QLLGHLSQTPSTDCAPFAYDPDSGKPIAPCGAIANSLFNDTLTLLQGGSEIKLLKTGIAWPSDKR 201
            ||.....:..:..|||  .|...|:||.|||.:|.||||||....:...::.:.|..|:|.||:.
plant   145 QLRSPKDEHETKSCAP--EDTLGGQPIVPCGLVAWSLFNDTYDFTRNNQKLPVNKKDISWKSDRE 207

  Fly   202 VKFRNPEGNLNVSLEGFSKPIF---WQKGL----ADLDPENPDNNGFQNEDLIVWMRTAALPSFR 259
            .|              |.|.:|   :|||.    ..||.:.|.:   :.|||||||||||||:||
plant   208 SK--------------FGKNVFPKNFQKGSLIGGKSLDQDIPLS---EQEDLIVWMRTAALPTFR 255

  Fly   260 KLYRRLNQTNTNYANGLKSGNYTLNI--KYNYPVVSFDGTKRMILSTTSVLGGKNPFLGIAYIVV 322
            |||.:::       ..|::|: |:.:  :.||...||:|.|:::|||||.|||:|.||||||:.|
plant   256 KLYGKID-------TDLQAGD-TIKVLLQNNYNTYSFNGKKKLVLSTTSWLGGRNDFLGIAYLTV 312

  Fly   323 GAICITLGLALLFIHM 338
            |:||:.|.::...:::
plant   313 GSICLFLAVSFSVLYL 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CDC50NP_573128.2 CDC50 67..340 CDD:281387 106/282 (38%)
AT1G16360NP_001320562.1 CDC50 70..328 CDD:397450 107/286 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 185 1.000 Domainoid score I995
eggNOG 1 0.900 - - E1_COG5035
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H110703
Inparanoid 1 1.050 232 1.000 Inparanoid score I1130
OMA 1 1.010 - - QHG53602
OrthoDB 1 1.010 - - D889671at2759
OrthoFinder 1 1.000 - - FOG0000577
OrthoInspector 1 1.000 - - otm2961
orthoMCL 1 0.900 - - OOG6_100927
Panther 1 1.100 - - O PTHR10926
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X371
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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