DRSC/TRiP Functional Genomics Resources

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Protein Alignment CDC50 and tmem30b

DIOPT Version :9

Sequence 1:NP_573128.2 Gene:CDC50 / 32615 FlyBaseID:FBgn0030752 Length:357 Species:Drosophila melanogaster
Sequence 2:NP_001002179.1 Gene:tmem30b / 431726 ZFINID:ZDB-GENE-040704-17 Length:341 Species:Danio rerio


Alignment Length:342 Identity:161/342 - (47%)
Similarity:217/342 - (63%) Gaps:19/342 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ENEESAAAKSKRPSDSAFKQQRLPAWQPVLTARTVLPTFFVIGVLFIPIGVVLLHLSNTANELII 71
            :||...|   :||.::||.|||||||||:|:|..|:|.|.|||:.||.|||.|...|.|...|.:
Zfish     2 KNEGETA---QRPDNTAFTQQRLPAWQPILSAGIVIPGFLVIGLAFIGIGVGLFLTSQTIQVLEM 63

  Fly    72 DYTKCRRSGGNTTCAEYLEANPGVTCPCEVPFVLPSDFNGVVYMYYGLTNYYQNHRRYVKSRDDE 136
            |||..........|:.....|    |.||:.|.|...|.|.|:.||||:|||||.|:|..|.|..
Zfish    64 DYTGVATDSSCFRCSMTSSQN----CTCEITFSLDKLFTGPVFFYYGLSNYYQNFRKYGVSLDYY 124

  Fly   137 QLLGHLS--QTPSTDCAPFAYDPDSGKPIAPCGAIANSLFNDTLTLLQ--GGSE--IKLLKTGIA 195
            ||.|...  .:|.:.|:|::|| :..:||.||||||||:||||..|.|  .|::  :.|...|||
Zfish   125 QLSGDTQYFTSPQSVCSPYSYD-NQNRPIVPCGAIANSMFNDTFELYQIINGTKNLVPLDGKGIA 188

  Fly   196 WPSDKRVKFRNP---EGNLNVSLEGFSKPIFWQKGLADLDPENPDNNGFQNEDLIVWMRTAALPS 257
            |.:|..:|:|||   .|:|..:..|..|||.|.|...|||..:|:||||.|:|.:||||.||||.
Zfish   189 WWTDYNIKYRNPSFVNGSLANAFAGTVKPINWPKPAYDLDSTDPNNNGFLNQDFLVWMRRAALPQ 253

  Fly   258 FRKLYRRLNQTNTNYANGLKSGNYTLNIKYNYPVVSFDGTKRMILSTTSVLGGKNPFLGIAYIVV 322
            |||||||:  |..|||.||.:|||::.:.|||||::|||.|:::.|..|.:||:|.||||||:||
Zfish   254 FRKLYRRI--TEGNYAAGLPAGNYSMTVHYNYPVLTFDGRKKVVFSNVSWMGGRNDFLGIAYLVV 316

  Fly   323 GAICITLGLALLFIHMR 339
            |::|:.:.:.:|.::.:
Zfish   317 GSLCVVMSIIMLIVYAK 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CDC50NP_573128.2 CDC50 67..340 CDD:281387 129/282 (46%)
tmem30bNP_001002179.1 CDC50 58..334 CDD:281387 129/283 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170581888
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5035
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53602
OrthoDB 1 1.010 - - D461644at33208
OrthoFinder 1 1.000 - - FOG0000577
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100927
Panther 1 1.100 - - O PTHR10926
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X371
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1110.720

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