DRSC/TRiP Functional Genomics Resources

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Protein Alignment CDC50 and tmem30a

DIOPT Version :9

Sequence 1:NP_573128.2 Gene:CDC50 / 32615 FlyBaseID:FBgn0030752 Length:357 Species:Drosophila melanogaster
Sequence 2:NP_989133.1 Gene:tmem30a / 394738 XenbaseID:XB-GENE-5816275 Length:365 Species:Xenopus tropicalis


Alignment Length:339 Identity:193/339 - (56%)
Similarity:230/339 - (67%) Gaps:14/339 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 KSKRPSDSAFKQQRLPAWQPVLTARTVLPTFFVIGVLFIPIGVVLLHLSNTANELIIDYTKCRRS 79
            |||:|.::||||||||||||:|||.||||.||:||::|||||:.:...||...|..||||....|
 Frog    25 KSKKPDNTAFKQQRLPAWQPILTAGTVLPAFFIIGIVFIPIGIGIFVTSNNIREFEIDYTGIDPS 89

  Fly    80 GGNTTCAEYLEANPGVTCPCEVPFVLPSDFNGVVYMYYGLTNYYQNHRRYVKSRDDEQLLGHLSQ 144
            .....|......:|  .|.|.:.|.|...|...|:|||||:|:|||||||||||||.||.|..:.
 Frog    90 SPCYKCLNVTLNDP--PCTCTINFTLDYAFESNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDKNS 152

  Fly   145 --TPSTDCAPFAYDPDSGKPIAPCGAIANSLFNDTLTLLQ--GGSE--IKLLKTGIAWPSDKRVK 203
              .||.:|.|  |..:..||||||||||||:|||||.|.|  .|:|  |.|:|.||||.:||.||
 Frog   153 LTNPSKECEP--YRTNGSKPIAPCGAIANSMFNDTLVLYQIVNGAEKQIPLVKKGIAWWTDKNVK 215

  Fly   204 FRNPEG---NLNVSLEGFSKPIFWQKGLADLDPENPDNNGFQNEDLIVWMRTAALPSFRKLYRRL 265
            |:||.|   ||.....|.:|||.|:|.:.:|||..||||||.|||.||||||||||:||||||.:
 Frog   216 FKNPTGNASNLEAVFAGTTKPINWKKPVYELDPSEPDNNGFINEDFIVWMRTAALPTFRKLYRLI 280

  Fly   266 NQTNTNYANGLKSGNYTLNIKYNYPVVSFDGTKRMILSTTSVLGGKNPFLGIAYIVVGAICITLG 330
            .:|:..|.. |..|||:|.::|||||.||||.|||||||.|.:||||||||||||.||:||..||
 Frog   281 EKTDATYPT-LAPGNYSLVVEYNYPVRSFDGRKRMILSTISWMGGKNPFLGIAYITVGSICFFLG 344

  Fly   331 LALLFIHMRCSRSN 344
            :.|..||.:....|
 Frog   345 VVLFVIHHKYGNRN 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CDC50NP_573128.2 CDC50 67..340 CDD:281387 158/281 (56%)
tmem30aNP_989133.1 CDC50 69..353 CDD:308793 160/288 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 292 1.000 Domainoid score I1493
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H110703
Inparanoid 1 1.050 364 1.000 Inparanoid score I2128
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D461644at33208
OrthoFinder 1 1.000 - - FOG0000577
OrthoInspector 1 1.000 - - oto105306
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R781
SonicParanoid 1 1.000 - - X371
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
99.090

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