DRSC/TRiP Functional Genomics Resources

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Protein Alignment CDC50 and cdc-50.B

DIOPT Version :9

Sequence 1:NP_573128.2 Gene:CDC50 / 32615 FlyBaseID:FBgn0030752 Length:357 Species:Drosophila melanogaster
Sequence 2:NP_501511.1 Gene:cdc-50.B / 184717 WormBaseID:WBGene00008969 Length:361 Species:Caenorhabditis elegans


Alignment Length:349 Identity:127/349 - (36%)
Similarity:183/349 - (52%) Gaps:26/349 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 KSKRPSDSAFKQQRLPAWQPVLTARTVLPTFFVIGVLFIPIGVVLLHLSNTANELIIDYTKCRRS 79
            |..:|.|:.:|||:|||.:|.....:.:|...:.||..:.:|:.|....|.:.|..|.||.|..|
 Worm    14 KKNQPKDTPWKQQKLPALRPHYNITSAIPVTLITGVATLAMGIALYFGHNGSLEQEIVYTDCALS 78

  Fly    80 GGNTTCAEYLEANPG-VTCPCEVPFVLPSDFNGVVYMYYGLTNYYQNHRRYVKSRDDEQLLGHLS 143
            .| |..:..:....| .|..|.....|..|:.|.|..||||:.:|||:|.|..||:|:||.|.::
 Worm    79 NG-TQASRIMRTEMGNQTFKCAYTITLNDDYTGEVKFYYGLSKFYQNNRLYFNSRNDQQLRGKVT 142

  Fly   144 QTPSTDCAPFAYDPDSGK--PIAPCGAIANSLFNDTLTLLQGGSEIKLLKTGIAW-------PSD 199
            :|..  |.|..|...:|.  ||||||.:|:|:||||..|.....:.....|.:.|       .::
 Worm   143 ETDG--CDPLEYVDVNGTKVPIAPCGKVADSMFNDTFELFYINDKASNAVTRVPWTTRGVLGATE 205

  Fly   200 KRVKFRNPEGNLNVSL----EGFSKPIFW-----QKGLADLDPENPDNNGFQNEDLIVWMRTAAL 255
            .:.|||||....|.:|    .|...|..|     |.||..:||:  ...||:|.|.:|||:.|||
 Worm   206 MKRKFRNPIRAENQTLCDVFAGTMPPPSWRYPICQLGLNSIDPD--VGIGFENIDFMVWMKVAAL 268

  Fly   256 PSFRKLYRRLNQTNTNYANGLKSGNYTLNIKYNYPVVSFDGTKRMILSTTSVLGGKNPFLGIAYI 320
            |.||||||.||:....::|||..|.|.|.|.|||||..:.|.|..:::..:.:|.:|.||.:.|:
 Worm   269 PKFRKLYRILNRQVDMFSNGLPKGQYQLTINYNYPVDMYSGDKYFVIANENWVGPRNLFLPVIYL 333

  Fly   321 VVGA--ICITLGLALLFIHMRCSR 342
            |||.  :.:|:...|:::..|.||
 Worm   334 VVGTFLLLVTILFILIWLKQRLSR 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CDC50NP_573128.2 CDC50 67..340 CDD:281387 108/293 (37%)
cdc-50.BNP_501511.1 CDC50 67..353 CDD:281387 108/290 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159930
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5035
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S1172
OMA 1 1.010 - - QHG53602
OrthoDB 1 1.010 - - D461644at33208
OrthoFinder 1 1.000 - - FOG0000577
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10926
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X371
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.770

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