DRSC/TRiP Functional Genomics Resources

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Protein Alignment CDC50 and chat-1

DIOPT Version :9

Sequence 1:NP_573128.2 Gene:CDC50 / 32615 FlyBaseID:FBgn0030752 Length:357 Species:Drosophila melanogaster
Sequence 2:NP_001023332.1 Gene:chat-1 / 177213 WormBaseID:WBGene00019946 Length:348 Species:Caenorhabditis elegans


Alignment Length:364 Identity:170/364 - (46%)
Similarity:222/364 - (60%) Gaps:43/364 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 STQ----QAENEESAAAKSKRPSDSAFKQQRLPAWQPVLTARTVLPTFFVIGVLFIPIGVVLLHL 62
            |||    .|:..::......||..||.:||:||||||:|||.||:||.||||.:|:||||.|...
 Worm    10 STQVSGIGADGVQTEKVLKNRPKASALRQQKLPAWQPILTATTVIPTVFVIGAIFLPIGVFLFIA 74

  Fly    63 SNTANELIIDYTKCRRSGGNTTCAEYLEANPGVTCPCEVPFVLPSDFNGVVYMYYGLTNYYQNHR 127
            |:..:|..::||.|                   ..||::...||:.|:|.|::||.|.|||||||
 Worm    75 SDAVSEFTVEYTNC-------------------LSPCQLQINLPNAFDGDVFLYYNLENYYQNHR 120

  Fly   128 RYVKSRDDEQLLGHLSQTPSTDCAPFAYDPDSGKPIAPCGAIANSLFNDTLTLLQGG-----SEI 187
            ||||||:|:|.||.|  |...|||||..||.:.||||||||||||:||||.||....     :.:
 Worm   121 RYVKSRNDQQYLGDL--TNVKDCAPFDIDPATKKPIAPCGAIANSIFNDTFTLAHRADTGIVTMV 183

  Fly   188 KLLKTGIAWPSDKRVKFRNP---EGNLNVSLEGFSKPIFWQKGLADLDPENP-DNNGFQNEDLIV 248
            .:...|:.|..||..||:||   :|||..:....:||..|.|        || :..||:|.|.||
 Worm   184 PVTTQGVIWNVDKDRKFKNPPLNDGNLCDAFNNTTKPPNWSK--------NPCEVGGFENVDFIV 240

  Fly   249 WMRTAALPSFRKLYRRLNQ-TNTNYANGLKSGNYTLNIKYNYPVVSFDGTKRMILSTTSVLGGKN 312
            ||||||||.|:||:|.::: ||..::|||..|.|.|.::.||||.||.|.|..::||||..||||
 Worm   241 WMRTAALPYFKKLWRIVDRTTNPLFSNGLPQGTYILTVENNYPVQSFGGKKEFVISTTSWAGGKN 305

  Fly   313 PFLGIAYIVVGAICITLGLALLFIHMRCSRSNMEMINVN 351
            .||||||:|||::.|.||:..:.|||:...|..|:.||:
 Worm   306 SFLGIAYLVVGSLAIVLGVVFIVIHMKFGHSMNELSNVS 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CDC50NP_573128.2 CDC50 67..340 CDD:281387 132/282 (47%)
chat-1NP_001023332.1 CDC50 72..333 CDD:281387 133/289 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159932
Domainoid 1 1.000 242 1.000 Domainoid score I1241
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H110703
Inparanoid 1 1.050 309 1.000 Inparanoid score I1567
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53602
OrthoDB 1 1.010 - - D461644at33208
OrthoFinder 1 1.000 - - FOG0000577
OrthoInspector 1 1.000 - - oto18734
orthoMCL 1 0.900 - - OOG6_100927
Panther 1 1.100 - - LDO PTHR10926
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R781
SonicParanoid 1 1.000 - - X371
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1514.940

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