DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hang and Lime

DIOPT Version :10

Sequence 1:NP_001138204.1 Gene:hang / 32613 FlyBaseID:FBgn0026575 Length:2223 Species:Drosophila melanogaster
Sequence 2:NP_610529.1 Gene:Lime / 36023 FlyBaseID:FBgn0033458 Length:487 Species:Drosophila melanogaster


Alignment Length:439 Identity:89/439 - (20%)
Similarity:145/439 - (33%) Gaps:137/439 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  1174 CPICNAVFSNNIGLSNHMRSHYTASNAVNAALAAANRMTPKSLTITATPATDSELGVGGTMSESA 1238
            |.:|...|::......|:..|....||.|.  ..|...||..   |.||...|            
  Fly    81 CYLCKQPFNDIESFKEHLTQHAAEINAWNN--TRAQEQTPPP---TITPFVQS------------ 128

  Fly  1239 PATPANVPPAMANQTPQEQAVFRR----SLDQAADRRFR-RMR--CRICQRRFSS--KKSYRYHM 1294
                .|.|..    .|.:|.:|..    .:|...:..:| ||.  |......:|.  :....:.|
  Fly   129 ----MNKPFV----HPTDQHLFHSIDHGDMDHHHNAHYRNRMEFGCPPPMDFYSPPLEPEIPFQM 185

  Fly  1295 LTDHQVQNVQFIKCKLCNAEFAYEKGLKVHLFKVHGKAIKDEMIIKQFECDVCSIVYSSESELQQ 1359
            ...|| ..:|.....:.....|||..::   |..|     ..:.::|      .:..|.:|.|:.
  Fly   186 PAVHQ-HPIQIPPMYMTAQHTAYEPPVQ---FLGH-----RPLELRQ------KLPMSPQSPLEP 235

  Fly  1360 HKRSVHKLTSASASTSAST------------SSKIDDDSLMDDGKPTSSD-LADLSTLAAGGSTA 1411
               |.|.:.||..|...::            .:::::..::::.:|.:.| :.|    |..|.:.
  Fly   236 ---SGHPMASAIPSNQHTSLEMQNLCVPEGILTRVEEPPVLENPRPQAQDPIQD----AGAGKSR 293

  Fly  1412 SAPLY---------------WYQCKYC-------------PSNFNTNKKLAIHINSHDEFDSNDY 1448
            ||.|.               .::|.:|             .|:|:.||:||  :|..::..:..:
  Fly   294 SAVLIEPKPPNAKSLAFNQGQFECNWCGKRLSSRQSLKYHESHFHGNKELA--VNRLEKNLTKQH 356

  Fly  1449 SCKDCGNVYSGRKSLWVHRYKKH-----------PQVPNPAECSLCRKVFFDRQMHDNHTPTCNR 1502
            .|..|...|..|..|.:|...||           |:.|...:..:..||........|..|   :
  Fly   357 KCLTCKKRYKRRTFLLMHMKVKHGIAFPGRVNADPEYPKSVDSPVSAKVPVSPMSSPNEAP---K 418

  Fly  1503 KPITSTG----------------------AHQQQDGQLHSHH--TAKRT 1527
            |.|.||.                      |.:||..||.|..  |:|||
  Fly   419 KEIWSTRIFNAVAAAKYQPASERADKYLVAPRQQTEQLESGFTITSKRT 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hangNP_001138204.1 zf-AD 80..154 CDD:462262
C2H2 Zn finger 1036..1057 CDD:275368
C2H2 Zn finger 1067..1088 CDD:275368
C2H2 Zn finger 1279..1298 CDD:275371 2/20 (10%)
C2H2 Zn finger 1308..1325 CDD:275371 3/16 (19%)
C2H2 Zn finger 1420..1440 CDD:275368 9/32 (28%)
C2H2 Zn finger 1450..1468 CDD:275368 6/17 (35%)
LimeNP_610529.1 PAT1 <112..>239 CDD:401645 32/167 (19%)
C2H2 Zn finger 317..336 CDD:275368 2/18 (11%)
C2H2 Zn finger 358..377 CDD:275368 6/18 (33%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.