DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC11 and Hdac8

DIOPT Version :9

Sequence 1:NP_001247296.1 Gene:HDAC11 / 326120 FlyBaseID:FBgn0051119 Length:343 Species:Drosophila melanogaster
Sequence 2:XP_017457598.1 Gene:Hdac8 / 363481 RGDID:1562895 Length:393 Species:Rattus norvegicus


Alignment Length:345 Identity:74/345 - (21%)
Similarity:130/345 - (37%) Gaps:61/345 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 VKRDDARSAGKLP--IVFSRNYAVRFGGLERLHPFDAAKGKHIHKLLCAQLQLDDGSFYEPTELT 83
            :..:.|.|...||  .::|..|......|.::    ..:...:|.|:.|..........:|...:
  Rat     3 IPEEPANSGHSLPPVYIYSPEYVSICDSLVKV----PKRASMVHSLIEAYALHKQMRIVKPKVAS 63

  Fly    84 KDQLRRIHTREYLK---------------SLRWSMNVACIAEVPLMAFVPNRYIQRSYLRPMRFQ 133
            .:::...||..||:               |:.:.:...|.|...:..:.       :.:......
  Rat    64 MEEMATFHTDAYLQHLQKVSQEGDEDHPDSIEYGLGYDCPATEGIFDYA-------AAIGGGTIT 121

  Fly   134 AAGSILAGKLALDYGWAINLGGGFHHCCSYRGGGFCPYADISLLIVRLFEQEPFRVRRIMIVDLD 198
            ||..::.||..:    |||..||:||.......|||...|..|.|:||..    :..||:.||||
  Rat   122 AAQCLIDGKCKV----AINWSGGWHHAKKDEASGFCYLNDAVLGILRLRR----KFDRILYVDLD 178

  Fly   199 AHQGNGHERDFNNVAAVYIFDM--YNAFVYPRDHVAKE---------SIRCAVELRNYTEDGFYL 252
            .|.|:|.|..|:..:.|....:  ::...:|......:         |:.  |.:::..:|..|.
  Rat   179 LHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDMSDVGLGKGRYYSVN--VPIQDGIQDEKYY 241

  Fly   253 RQLKRCLMQSLAEFRPDMVVYNAGTDVLEGDPLGNLAISAEGVIERDRLVFSTFRALGIPVVMLL 317
            ...:..|.:....|.|..||...|.|.:.|||:.:..::..|:.:..:.|..    ..:..::|.
  Rat   242 HICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYVLQ----WQLATLILG 302

  Fly   318 SGGYLKAS--------AGVI 329
            .|||..|:        .|||
  Rat   303 GGGYNLANTARCWTYLTGVI 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC11NP_001247296.1 HDAC_classIV 51..336 CDD:212519 67/313 (21%)
Hdac8XP_017457598.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0123
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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