DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC11 and hdac8

DIOPT Version :9

Sequence 1:NP_001247296.1 Gene:HDAC11 / 326120 FlyBaseID:FBgn0051119 Length:343 Species:Drosophila melanogaster
Sequence 2:NP_001120462.1 Gene:hdac8 / 100145561 XenbaseID:XB-GENE-5863426 Length:369 Species:Xenopus tropicalis


Alignment Length:317 Identity:71/317 - (22%)
Similarity:130/317 - (41%) Gaps:51/317 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 LPI-VFSRNYAVRFGGLERLHPFDAAKGKHIHKLLCAQLQLDDGSFYEPTELTKDQLRRIHTREY 95
            ||: :.|..|......::...|   .:...:|.|:.|...|.:....:|...:.:::...||..|
 Frog     6 LPVYIHSAEYVELCDNVQSKVP---RRASMVHSLIEAYGLLKEMRVVKPKVASMEEMAAFHTDSY 67

  Fly    96 L---------------KSLRWSMNVACIAEVPLMAFVPNRYIQRSYLRPMRFQAAGSILAGKLAL 145
            |               ::|.:.:...|    |:...:   |...:.:......||..::|||..:
 Frog    68 LQHLHKVSEEGDNDDPETLEYGLGYDC----PITEGI---YDYAAAVGGATLTAAEQLMAGKTRI 125

  Fly   146 DYGWAINLGGGFHHCCSYRGGGFCPYADISLLIVRLFEQEPFRVRRIMIVDLDAHQGNGHERDFN 210
                |||..||:||.......|||...|..|.|::|.|    :..|::.||:|.|.|:|.|..|:
 Frog   126 ----AINWPGGWHHAKKDEASGFCYLNDAVLGILKLRE----KFDRVLYVDMDLHHGDGVEDAFS 182

  Fly   211 NVAAVYIFDM--YNAFVYPRDHVAKE---------SIRCAVELRNYTEDGFYLRQLKRCLMQSLA 264
            ..:.|....:  ::...:|......:         |:.  |.|::..:|..|.:..:..|.:...
 Frog   183 FTSKVMTVSLHKFSPGFFPGTGDVSDIGLGKGRYYSVN--VPLQDGIQDEKYYQICEGVLKEVFT 245

  Fly   265 EFRPDMVVYNAGTDVLEGDPLGNLAISAEGVIERDRLVFSTFRALGIPVVMLLSGGY 321
            .|.|:.||...|.|.:.|||:.:..::.:|:.:..:.|..    ..:|.::|..|||
 Frog   246 TFNPEAVVLQLGADTIAGDPMCSFNMTPQGIGKCLKYVLQ----WQLPTLILGGGGY 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC11NP_001247296.1 HDAC_classIV 51..336 CDD:212519 67/297 (23%)
hdac8NP_001120462.1 Histone deacetylase. /evidence=ECO:0000250 5..316 71/317 (22%)
HDAC8 7..369 CDD:212524 70/316 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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