DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atg16 and AT3G50590

DIOPT Version :9

Sequence 1:NP_001138124.2 Gene:Atg16 / 326115 FlyBaseID:FBgn0039705 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_190628.6 Gene:AT3G50590 / 824223 AraportID:AT3G50590 Length:1614 Species:Arabidopsis thaliana


Alignment Length:737 Identity:142/737 - (19%)
Similarity:241/737 - (32%) Gaps:224/737 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VWRAHVV----RRLRERN------RKECDNFKEIIEQNNRLIDHVAQLKA----DNLKIS----- 52
            ||:..|:    |...:.|      .:..|..|.:.:|....:..:.::|.    ..|.::     
plant   272 VWKTRVIINPNRPSTQTNFFEPAAMESIDIPKILSQQGGEAVYPLPRIKTLEVHPKLNLAALIFA 336

  Fly    53 --VENEQLRN-------------AVSTGGTGSNVAIATLEKKL--------LSQQEELTELHKRK 94
              |.||..:|             ||.....||:.::  |::||        |::.:....|.:.|
plant   337 NMVGNENTQNRAAQTREGRKQLFAVLQSARGSSASV--LKEKLSSMGSSGILAEHQLQALLQEHK 399

  Fly    95 GENSQMIVDLNQK-------VEQQRIIISEKEHSLVEQQTNNNRLR--AEVQLLHSSLEELKKLN 150
            |::...|.|:.:|       :|............|:......::|:  ...|..|..|....|.|
plant   400 GQSQLTISDIARKAFLYSHFMEGHAKTAPISRLPLITVVDTKDQLKDIPVCQPFHLELNFFNKPN 464

  Fly   151 NTMLDEHTALQLAFSSLEEKLRGVQDENRRLLERLMQYKSKDADKLNEENESIIRK---RLPSIF 212
            ..              |...:|....|...|:          |..|....::|.:|   .:|...
plant   465 RV--------------LHYPVRSFYIEGLNLM----------AHNLCSGTDNIYKKLYTSIPGNV 505

  Fly   213 RKRSAKL----KRDLEDAVREPSSSSN---------AASSPGAASLQRNSSPAQFVGGLIGDEDF 264
            ...|..:    ||.|...|.|.|.::|         .:..|.:.........|.|:|     .:.
plant   506 EYHSKHIVYSRKRHLFLVVFEFSGATNEVVLYWENTGSQLPNSKGSTAKGCDAAFIG-----PND 565

  Fly   265 DEAAINGAMEAIGLDDNE-----YISARFTAGEIAENSRASIDTLKATGYLGQANPTKIL--MKF 322
            |:.||        ||:::     ||..:.|..|..|.:..|.:..|.     :|:|:.|.  .:|
plant   566 DQFAI--------LDEDKTGLSMYILPKLTTMEENEKNLLSEENQKK-----EADPSGIQGPQQF 617

  Fly   323 EAHENESHAVRWSPVER--MVATGGAD-RKVKLWDIGKNSTEPRAVLSGSSAGINSV-----DFD 379
             ..|.|...|..:|:|.  |.|..|.. ...||:...:.|......:|....|..|:     :..
plant   618 -MFETEVDRVFSTPIESTLMFACNGTQIGLAKLFQGYRLSASDGHYISTQGEGRKSIKLKKHEIA 681

  Fly   380 STGAYILGTSNDYGARVW-------TVMDNRL-RH-----TLTGHSGKVMAAKYV-------QEP 424
            ....|.|..:..|   :|       |:|..:| ||     |..|:...::..:.|       ..|
plant   682 LQSFYSLPFNVVY---IWPVLFEIKTIMFRKLTRHVQWQETPRGYVAGILTTQRVLMVSLLWVGP 743

  Fly   425 IKVVTGSHDRTLKIWD--LRSIACIETKFAG--SSCNDLV----TTD------------------ 463
            ..:.:.:....|..||  :|:|..|.|.:|.  .:.||.:    .||                  
plant   744 ALLFSTTTAVCLLGWDGKVRTILSISTPYAALVGALNDRLLLAHPTDISPKQKKGIEIKSCLVGL 808

  Fly   464 ----SLGSTIISGHYDKKI-----------RFWDIRTEKQADDVLMPAKITSLDLSKD------- 506
                .:|.:.:...:::|:           ||..:|...::.|:|..:.....||:..       
plant   809 LEPLLIGFSTMQQTFEQKVDLSEILYQITTRFDSLRITPRSLDILARSAPVCGDLAVSLAQAGPQ 873

  Fly   507 ------CNYLICSVRDDTIKLLDLRKNQVISTFTNEHFKISCDFARASFNS------SGLKIAC- 558
                  |.|.|.::|..|          .:|...:| |..|.|:.:....|      ..|..|| 
plant   874 FNQVLRCAYAIKALRFST----------ALSVLKDE-FLRSRDYPKCPPTSLLFQRFRQLGYACI 927

  Fly   559 --GSADGAIYIWNVNGFLEATL 578
              |..|.|...:.|.|..|:.|
plant   928 KYGQFDSAKETFEVIGDYESML 949

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Atg16NP_001138124.2 ATG16 11..197 CDD:285778 39/236 (17%)
SynN 120..229 CDD:294095 21/117 (18%)
WD40 322..605 CDD:238121 70/348 (20%)
WD40 repeat 331..368 CDD:293791 9/39 (23%)
WD40 <341..612 CDD:225201 63/327 (19%)
WD40 repeat 374..410 CDD:293791 11/53 (21%)
WD40 repeat 415..453 CDD:293791 9/46 (20%)
WD40 repeat 461..491 CDD:293791 7/62 (11%)
WD40 repeat 498..536 CDD:293791 8/50 (16%)
WD40 repeat 544..579 CDD:293791 11/44 (25%)
WD40 repeat 585..609 CDD:293791
AT3G50590NP_190628.6 WD40 <5..276 CDD:225201 2/3 (67%)
WD40 repeat 110..153 CDD:293791
WD40 <156..274 CDD:295369 1/1 (100%)
WD40 repeat 159..195 CDD:293791
WD40 repeat 203..245 CDD:293791