DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atg16 and dtl

DIOPT Version :9

Sequence 1:NP_001138124.2 Gene:Atg16 / 326115 FlyBaseID:FBgn0039705 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_989402.1 Gene:dtl / 395039 XenbaseID:XB-GENE-985623 Length:713 Species:Xenopus tropicalis


Alignment Length:306 Identity:78/306 - (25%)
Similarity:122/306 - (39%) Gaps:59/306 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   318 ILMKFEAHENESHAVRWSPVERMVATGGADRKVKLWDIGKNSTEPRAVLSGSSAGINSVDFDSTG 382
            ::.:|.||.|....:.|.|.|..:.|...|:..||||:  .:.:......|....:.||.|....
 Frog    90 VVKEFMAHTNAVFDIAWVPGEHKLVTASGDQTAKLWDV--KAGDLIGECKGHQCSLKSVAFSKFE 152

  Fly   383 AYILGT-SNDYGARVWTVMDN------RLRHTLTG-HSGKVMAAKYVQEPIKVVTGSHDRTLKIW 439
            ..:..| ..|....||....|      |..:.:|| |:     |...|.|.||      :..|.:
 Frog   153 KAVFSTGGRDGNIMVWDTRCNKKDGFYRQVNQITGAHN-----ALDKQTPSKV------KKRKPY 206

  Fly   440 DLRSIA-CIETKFAGSSCNDLVTTDSLGSTIIS-GHYDKKIRFWDIRTEKQA---DDVLMPAKI- 498
             :|.:| .::::   .|...::..|.  .|||| |..|..::.||:|....|   |.|  |||: 
 Frog   207 -VRGLAPSVDSQ---QSVTVVIFQDE--HTIISAGAVDGIVKVWDLRKNYSAYRQDPV--PAKLF 263

  Fly   499 ------------TSLDLSKDCNYLICSVRDDTIKLLDLR--KNQVISTF---TNEHFKISCDFAR 546
                        ::|.|......|..|..||.:.:.:..  |.:.:|.|   .|..|     :.:
 Frog   264 PYPGNSTRKLGYSNLVLDPTGTNLFASCTDDNVYMFNATGLKTEPVSVFGGHQNSTF-----YIK 323

  Fly   547 ASFNSSGLKIACGSADGAIYIWNVNG--FLEATLKGHSTAVNAVSW 590
            .|.:..|..:..||:|.:.|||.|:.  ....||.||...|.:|:|
 Frog   324 TSVSPDGQFLLSGSSDHSAYIWQVSDPKVPPVTLTGHCQEVTSVAW 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atg16NP_001138124.2 ATG16 11..197 CDD:285778
SynN 120..229 CDD:294095
WD40 322..605 CDD:238121 78/302 (26%)
WD40 repeat 331..368 CDD:293791 9/36 (25%)
WD40 <341..612 CDD:225201 71/283 (25%)
WD40 repeat 374..410 CDD:293791 9/42 (21%)
WD40 repeat 415..453 CDD:293791 8/38 (21%)
WD40 repeat 461..491 CDD:293791 11/33 (33%)
WD40 repeat 498..536 CDD:293791 9/55 (16%)
WD40 repeat 544..579 CDD:293791 10/36 (28%)
WD40 repeat 585..609 CDD:293791 3/6 (50%)
dtlNP_989402.1 WD 1 47..89
WD40 repeat 53..95 CDD:293791 0/4 (0%)
WD40 55..390 CDD:238121 78/306 (25%)
WD 2 96..135 12/40 (30%)
WD40 repeat 102..138 CDD:293791 9/37 (24%)
WD 3 138..178 9/39 (23%)
WD40 repeat 143..193 CDD:293791 13/54 (24%)
DDB1-binding motif. /evidence=ECO:0000250 168..171 1/2 (50%)
Nuclear localization signal. /evidence=ECO:0000255 197..204 3/12 (25%)
WD 4 215..254 12/43 (28%)
WD40 repeat 220..264 CDD:293791 16/47 (34%)
DDB1-binding motif. /evidence=ECO:0000250 244..247 2/2 (100%)
WD 5 270..309 7/38 (18%)
WD40 repeat 275..313 CDD:293791 8/37 (22%)
WD 6 314..355 11/45 (24%)
WD40 repeat 321..358 CDD:293791 10/36 (28%)
WD 7 359..399 5/11 (45%)
WD40 repeat 364..389 CDD:293791 3/6 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 474..544
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 604..623
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 635..700
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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