DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PH4alphaNE3 and p4htmb

DIOPT Version :9

Sequence 1:NP_651814.1 Gene:PH4alphaNE3 / 326114 FlyBaseID:FBgn0051017 Length:481 Species:Drosophila melanogaster
Sequence 2:XP_001340234.2 Gene:p4htmb / 799930 ZFINID:ZDB-GENE-110131-7 Length:510 Species:Danio rerio


Alignment Length:364 Identity:74/364 - (20%)
Similarity:131/364 - (35%) Gaps:118/364 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   206 QDVALLQARCLVELDRRDEAHE--------VLLDQPD-LADNSISL---LDQFKANPYEAIDSSP 258
            |.|:|:..:          .||        :|.:.|| |::...::   |.|.|.    .::|..
Zfish   136 QKVSLVSGK----------VHEMKTLSLKPLLFEIPDFLSEEECAVVVRLAQLKG----LMESQV 186

  Fly   259 KLGEGYKRLCRSSFSPNPSKLHCRYNSTTSAFLILAPLKMEEISLEPHIV--------------- 308
            .:.||.:.| ....:.:|.::   :|     ||.|    .::..|:||.:               
Zfish   187 MVPEGQEEL-DQQLNLSPEEI---FN-----FLDL----NQDGQLQPHEILTHSRVRDGIWLTSE 238

  Fly   309 ----VYHDILPDKDIQQLITLAEPLLKPTEMFD--------DNKNEARSSYRTPL-----GGPLL 356
                :|..:..|.|...|::|.|.....::.|.        :.....|:|..|.|     ...:|
Zfish   239 NLKEIYDGLKADLDGNGLLSLEEFGRLRSDAFQRFLLQRGVERSQLVRNSRHTWLYQGQGAHQVL 303

  Fly   357 DSLTQRMRDITGLQ---IRQGNPINIIKYGFGAPYTNYYD-----------FFKKRNSESKGF-- 405
            ..|.:|:..:|.|.   :....|:.:::|..|..|..::|           ..:...:.:..|  
Zfish   304 QDLRKRVTLLTRLPSSLVELSEPLQVVRYEQGGHYHAHHDSGPVYPETACTHTRLAANTTSPFQT 368

  Fly   406 GDRMATFMFYLNDAPYGGATVFP---------------------------RLNVKVPAERGKVLF 443
            ..|..|.:||||:...||.|.||                           :.|::|...:|..:|
Zfish   369 SCRYITVLFYLNNVQEGGETTFPVADNRTYEEASLIQNDVDLLDTRKHCDKGNLRVKPVKGTAVF 433

  Fly   444 WYNLNGD----THDMEPTTMHAACPVFHGSKWVMTAWIH 478
            |||...|    ..:.:..::|..|.|..|:|||...||:
Zfish   434 WYNYLSDGRGWVGEQDEYSLHGGCVVTQGTKWVANNWIN 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PH4alphaNE3NP_651814.1 P4Ha_N 25..149 CDD:285528
P4Hc 316..478 CDD:214780 48/221 (22%)
p4htmbXP_001340234.2 EF-hand_7 204..262 CDD:290234 12/69 (17%)
EFh 204..262 CDD:298682 12/69 (17%)
P4Hc 285..471 CDD:214780 41/185 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170583458
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1591
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1438683at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.750

Return to query results.
Submit another query.