DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PH4alphaNE3 and p4ha1b

DIOPT Version :9

Sequence 1:NP_651814.1 Gene:PH4alphaNE3 / 326114 FlyBaseID:FBgn0051017 Length:481 Species:Drosophila melanogaster
Sequence 2:NP_999856.1 Gene:p4ha1b / 100003675 ZFINID:ZDB-GENE-030131-4089 Length:536 Species:Danio rerio


Alignment Length:524 Identity:146/524 - (27%)
Similarity:251/524 - (47%) Gaps:76/524 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 SRQEFLDTESAKMDLMQLDVELIDNLMNYAEKIDEKASQLKRLAQELRQPLHSAKGREEEYLGNP 77
            :..:|..:.....||:..:.:|:.:|..|.::.:.:..|:|..|.:|.....:|....|.:||:|
Zfish    17 AHNDFFTSTGQMTDLLYAEKDLVTSLKEYIKQEENRLEQVKEWADKLDSLTITATQDPEGFLGHP 81

  Fly    78 LHSFPLIRHMYQDWRYLEEFMKKPVGEEEIQFLRRKLPELPWQVDTEEASVSIFRIAETYGMMPW 142
            :::|.|::.:..:|..||..:.|......|..|..:....|...|...|:.::.|:.:||.:...
Zfish    82 VNAFKLMKRLNSEWSDLENLVLKDTTNGFISNLTVQRQYFPTDEDQTGAAKALLRLQDTYQLSAN 146

  Fly   143 DMANGLIDNVRFNSTLPALDCFEVAKM-YFKWGYFKQALQWITISKARMKE-EYSGVYEVLGMNR 205
            .:::|.:..|...|.:...||:|:.|: |....|:...| |:..:.:::.| |.|.:.:|..|:.
Zfish   147 AISSGDLPGVVHKSRMTVEDCYELGKIAYSDADYYHTEL-WMAQALSQLDEGEESPIDKVTVMDY 210

  Fly   206 QDVALLQARCL---VELDRR----DEAH----------EVLLDQPDLADNSIS------LLDQFK 247
            ...|:.|...|   :||.:|    |..|          |..|::...|:|...      :||:..
Zfish   211 LSYAIYQQGELDRALELTKRMLKLDPNHHRANGNLKYFEFQLEKQRKAENEKKEEDQKRVLDKRD 275

  Fly   248 ANPYEAIDSSPKLGEGYKRLCRS---SFSP-NPSKLHCRY-NSTTSAFLILAPLKMEEISLEPHI 307
            |....:.|..|: .:.|:||||.   ..:| ..|:|.||| |:..:..|:|||:|.|:....|.|
Zfish   276 AQRKRSKDPLPE-RKKYERLCRGEGIKLTPRRQSRLFCRYSNNNRNPRLLLAPVKQEDEWDRPRI 339

  Fly   308 VVYHDILPDKDIQQLITLAEPLLKPTEMFDDNKNEARSSYRTPLGGPL----------------- 355
            |.||:|:.|.:|:.:..:|:|.|:            |::...|:.|.|                 
Zfish   340 VRYHEIISDSEIETVKEMAKPRLR------------RATISNPITGVLETAPYRISKSAWLSGYE 392

  Fly   356 ---LDSLTQRMRDITGLQIRQGNPINIIKYGFGAPYTNYYDFFKKRNSES---KGFGDRMATFMF 414
               ::.:.||:.|:|||::.....:.:..||.|..|..::||.:|...::   .|.|:|:||::|
Zfish   393 HSTIERINQRIEDVTGLEMDTAEELQVANYGVGGQYEPHFDFGRKDEPDAFKELGTGNRIATWLF 457

  Fly   415 YLNDAPYGGATVFPRLNVKVPAERGKVLFWYNL----NGDTHDMEPTTMHAACPVFHGSKWVMTA 475
            |::|...||||||..:...|..::|..:|||||    .||.     :|.||||||..|:|||...
Zfish   458 YMSDVSAGGATVFTDVGAAVWPKKGTAVFWYNLFPSGEGDY-----STRHAACPVLVGNKWVSNK 517

  Fly   476 WIHE 479
            ||||
Zfish   518 WIHE 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PH4alphaNE3NP_651814.1 P4Ha_N 25..149 CDD:285528 29/123 (24%)
P4Hc 316..478 CDD:214780 57/188 (30%)
p4ha1bNP_999856.1 P4Ha_N 24..153 CDD:285528 29/128 (23%)
TPR repeat 164..199 CDD:276809 9/35 (26%)
TPR_16 168..238 CDD:290168 18/70 (26%)
TPR repeat 204..234 CDD:276809 8/29 (28%)
P4Hc 347..520 CDD:214780 57/189 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1591
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D192165at33208
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10869
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X129
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.920

Return to query results.
Submit another query.