DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG31016 and P4ha2

DIOPT Version :9

Sequence 1:NP_001263119.1 Gene:CG31016 / 326113 FlyBaseID:FBgn0051016 Length:536 Species:Drosophila melanogaster
Sequence 2:NP_001101745.1 Gene:P4ha2 / 360526 RGDID:1309673 Length:535 Species:Rattus norvegicus


Alignment Length:550 Identity:159/550 - (28%)
Similarity:270/550 - (49%) Gaps:61/550 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 VVLFAVSFILVLSWIAEGYRDRQNYVISVEEKMDLLEKDRELIIVLDSYATELNEKIIMLKRIVK 68
            |::..:|:..||||:      :..:..|:....||:..:::|:..|..|......|:..:|....
  Rat     5 VLVLLMSWFGVLSWV------QAEFFTSIGHMTDLIYAEKDLVQSLKEYILAEEAKLSKIKSWAS 63

  Fly    69 EFKQPLEKAKNREEEYLSNPIDSLSLMRQMHEDWEKVEKLLKKPVGQEKIALVEKMREDLPVEND 133
            :.:....|:....|.||::|:::..|:::::.||..:..|:.:......:|.:...|:..|.:.|
  Rat    64 KMEALTSKSAADPEGYLAHPVNAYKLVKRLNTDWPALGDLVLQDAAAGFVANLSVQRQFFPTDED 128

  Fly   134 LMEANQAMFRILHTYDLEPKDVSAGWIDGVQYGGKMSASDCFTMGTFSFMAGSYQIASKWL---- 194
            ...|.:|:.|:..||.|:|..:|.|.:.|.:|...:|..|||.||..::..|.|.....|:    
  Rat   129 ESGAARALMRLQDTYKLDPDMISRGELPGTKYQAMLSVDDCFGMGRSAYNEGDYYHTVLWMEQVL 193

  Fly   195 ---------SAAKDLLVD-------QPRKYHEVMGITKADVTLLLARSLIASGNVSIATDMLMRD 243
                     :..|.|::|       |....|..:.:|:..::|..:... |.||:.....:|.. 
  Rat   194 KQLDAGEEATVTKSLVLDYLSYAVFQLGDLHRAVELTRRLLSLDPSHER-AGGNLRYFERLLEE- 256

  Fly   244 FMFGEAGSALTVHFLRNKPKPSI----NLESWESD-----ESFNQLCRSSSRRQMGESKPSRLHC 299
                |.|.:|:     |:....:    ||.....|     :.:..|||....: |...:..||.|
  Rat   257 ----ERGKSLS-----NQTDAGLASQENLYERPVDYLPERDVYESLCRGEGIK-MTPRRQKRLFC 311

  Fly   300 RY---NTITTPFLKLAPFRMEELSLDPYVIFYHNVLSDAEIEKLKPMGKPFLERAKVFRVEKGSD 361
            ||   |.:  |.|.:|||:.|:....|:::.|::|:||.|||::|.:.||.|.||.|...:.|..
  Rat   312 RYHHGNRV--PQLLIAPFKEEDEWDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVL 374

  Fly   362 EIDPSRSADGAWLPHQNIDPDDLEVLNRIGRRIEDMTGLNTRSGSKMQFLKYGFGGHFVPHYDYF 426
            .:...|.:..:||     :.||..|:.|:.||::.:|||..::...:|...||.||.:.||:|:.
  Rat   375 TVASYRVSKSSWL-----EEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFS 434

  Fly   427 NS---KTFSLETVGDRIATVLFYLNNVDHGGATVFPKLNLAVPTQKGSALFWHNIDRKSYDYDTR 488
            .|   ..|.....|:|:||.|.|:::|:.|||||||.|..|:..:||:|:||:|:.| |.:.|.|
  Rat   435 RSDERDAFKRLGTGNRVATFLNYMSDVEAGGATVFPDLGAAIWPKKGTAVFWYNLLR-SGEGDYR 498

  Fly   489 TFHGACPLISGTKLVMTRWIYELDQMFLIP 518
            |.|.|||::.|.|.|..:|.:|..|.||.|
  Rat   499 TRHAACPVLVGCKWVSNKWFHERGQEFLRP 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31016NP_001263119.1 P4Ha_N 31..160 CDD:285528 30/128 (23%)
P4Hc 333..508 CDD:214780 69/177 (39%)
P4ha2NP_001101745.1 P4Ha_N 27..104 CDD:400573 15/76 (20%)
P4Hc 346..519 CDD:214780 70/178 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1591
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D192165at33208
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10869
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X129
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.920

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