DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PH4alphaSG1 and PH4alphaEFB

DIOPT Version :9

Sequence 1:NP_733376.1 Gene:PH4alphaSG1 / 326112 FlyBaseID:FBgn0051014 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_733371.1 Gene:PH4alphaEFB / 43620 FlyBaseID:FBgn0039776 Length:550 Species:Drosophila melanogaster


Alignment Length:569 Identity:210/569 - (36%)
Similarity:311/569 - (54%) Gaps:61/569 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 FRLSIILSLLCVF--PVNGDYYSAISELERLLDVEAFIVEKFDEYLERAQQEQEN-LKRFLDQID 63
            :||.::|.:|.:.  |.||:.|:|::|:|.||:.|:.::...:.|: |.|:::.| ||..:|:..
  Fly     5 WRLMLLLGILLLVGGPANGEVYTALAEMEELLETESVLITNLEGYI-RVQEDKLNFLKNKMDEYQ 68

  Fly    64 EQQNDRG-DLEEYFGNPINAFITIKRLVHDWKFNVFDPVFDSSNFETYKNNL------SDSLEKI 121
            .:.:|.. |:..|..|||||::..|||..||:               ...||      :|.|:.|
  Fly    69 REHSDASHDITAYVSNPINAYLLTKRLTTDWR---------------QVENLMEHDVGTDFLQNI 118

  Fly   122 N-----FKGPTQEDLHGATRALLRLQNMYQLNTDHLASGVLHPGEKNAL--GTSLSASDCFELGK 179
            .     .|.|:.|||:||..||||||:.|||:|..:|.|.|     |.:  .|.:|:.||||||:
  Fly   119 TQYRSLLKFPSDEDLNGAAVALLRLQDTYQLDTSSVARGKL-----NGIQYSTEMSSDDCFELGR 178

  Fly   180 NLCEIKEYSYGSEWLLEARKRLHGKPLGFISPNVSDVEILEHLSSAFNGLGNLKLAYKLNNEILD 244
            ......:|.:...|:.||..|:..:|... :.:.:..:|||:|:.:....||::.|..:.||:|.
  Fly   179 QSYVNHDYYHTVLWMNEAMARMLEEPTNH-TQSFTKADILEYLAFSTYKEGNIESALTMTNELLQ 242

  Fly   245 KKPDHEEALKNKILYEGQLARERSF-----------APRKQVEL----PQIAEKEQKESYKLYTQ 294
            ..|.||.|..||..||.::|::...           .|:..:.:    |.|.:..::.:|::   
  Fly   243 LLPHHERANGNKRFYEKEIAQQLQLRKMKGDDGTDEMPKSDLPVAKSDPAIFDMTERRAYEM--- 304

  Fly   295 VCRGELHQSPREQRNLRCWLYHQGVPYYRLSPFKIEQLNVDPYVAYVHEVLWDSEIDTIMEHGKG 359
            :|||||..||.:.|:|||......||:.||.|.|:|:::.|||:...|:.::|||||.|....:.
  Fly   305 LCRGELKPSPSDLRSLRCRYVTNRVPFLRLGPLKLEEVHADPYIVIYHDAMYDSEIDLIKRMARP 369

  Fly   360 NMERSKVGQSENST--TSEVRISRNTWLWYDANPWLSKIKQRLEDVTGLSTESAEPLQLVNYGIG 422
            ...|:.|..|....  |:..|||::.||....:..:..:.||..|:|||..:|||.||:||||||
  Fly   370 RFRRATVQNSVTGALETANYRISKSAWLKTQEDRVIETVVQRTADMTGLDMDSAEELQVVNYGIG 434

  Fly   423 GQYEPHFDFVEDDGQSVFSW--KGNRLLTALFYLNDVALGGATAFPFLRLAVPPVKGSLLIWYNL 485
            |.|||||||...:.|..|..  .|||:.|.|||::||..||||.|..|..|:.|.||:...|.||
  Fly   435 GHYEPHFDFARKEEQRAFEGLNLGNRIATVLFYMSDVEQGGATVFTSLHTALFPKKGTAAFWMNL 499

  Fly   486 HSSTHKDFRTKHAGCPVLQGSKWICNEWFHVGAQEFRRPCGLSSDEGKF 534
            |.....|.||:||.||||.|:||:.|:|.|...|||||||.|..|.|:|
  Fly   500 HRDGQGDVRTRHAACPVLTGTKWVSNKWIHERGQEFRRPCDLEEDHGEF 548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PH4alphaSG1NP_733376.1 P4Ha_N 23..157 CDD:285528 50/146 (34%)
P4Hc 347..515 CDD:214780 79/171 (46%)
PH4alphaEFBNP_733371.1 P4Ha_N 28..159 CDD:285528 50/146 (34%)
P4Hc 356..529 CDD:214780 79/172 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45461964
Domainoid 1 1.000 91 0.514 Domainoid score I2609
eggNOG 1 0.900 - - E1_KOG1591
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 79 1.000 Inparanoid score I2378
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D192165at33208
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 1 1.000 - - mtm1209
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10869
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X129
109.900

Return to query results.
Submit another query.