DRSC/TRiP Functional Genomics Resources

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Protein Alignment PH4alphaSG1 and P4htm

DIOPT Version :9

Sequence 1:NP_733376.1 Gene:PH4alphaSG1 / 326112 FlyBaseID:FBgn0051014 Length:540 Species:Drosophila melanogaster
Sequence 2:XP_217285.7 Gene:P4htm / 301008 RGDID:1311848 Length:503 Species:Rattus norvegicus


Alignment Length:480 Identity:119/480 - (24%)
Similarity:167/480 - (34%) Gaps:160/480 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   181 LCEIKEYSYGSEWLLEARKRLHG-----------------KPLGFISPNVSDV-EILEHLSSAFN 227
            :.|..|.:...:|.|....|..|                 ||.|..|.....| .:..||.    
  Rat    12 VAETIEEASNLQWPLPPEHRPSGAATRPGDGEEAPVRPLCKPRGICSRAYFLVLMVFVHLY---- 72

  Fly   228 GLGN-----LKLAYKLNNEILDKKPDHEEALKNKILYEGQLAR----ERSFAPRKQV-------- 275
             |||     |.:.|...:|..|..|...|.....:...|.|.|    :..:..:.||        
  Rat    73 -LGNVLALLLFVHYSNGDESTDPGPQRREQSPQPVPTLGPLTRLEGIKVGYERKVQVVAGRDHFI 136

  Fly   276 ----------ELPQIAEKEQKESYKLYTQVCRGELHQS-----------PREQRNLRCWLYHQGV 319
                      |:|.....|:          ||..:|.:           |.|:       |.:.:
  Rat   137 RTLSLKPLLFEIPGFLSDEE----------CRLIIHLAQMKGLQRSQILPTEE-------YEEAM 184

  Fly   320 PYYRLSPFKIEQL---NVDPYVAYVHEVLWDSEI--------DTIME---------HGKG----- 359
            ...|:|...:.||   |.|..: .:.|||..:.:        :.|.|         .|.|     
  Rat   185 SAMRVSQLDLFQLLDQNHDGRL-QLREVLAQTRLGNGRWMTPENIQEMYSAIKADPDGDGVLSLQ 248

  Fly   360 ---NMER---SKVGQSENSTTSE-VRISRNTWLWY--DANPWLSKIKQRLEDVTGLS---TESAE 412
               ||:.   .|..:|..:.:|| ||.|.:|||..  .|:..:..|:||:..:|.||   .|.:|
  Rat   249 EFSNMDLRDFHKYMRSHKAESSELVRNSHHTWLHQGEGAHHVMRAIRQRVLRLTRLSPEIVELSE 313

  Fly   413 PLQLVNYGIGGQYEPHFD----FVED--------DGQSVFSWKGNRLLTALFYLNDVALGGATAF 465
            |||:|.||.||.|..|.|    :.|.        ..:||......|.:|.|||||:|..||.|.|
  Rat   314 PLQVVRYGEGGHYHAHVDSGPVYPETVCSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVF 378

  Fly   466 PF-----------------LR----------LAVPPVKGSLLIWYNLHSS-----THKDFRTKHA 498
            |.                 ||          |.|.|.:|:.:.|||....     ...|..:.|.
  Rat   379 PVADNRTYDEMSLIQDNVDLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQGWVGEVDDYSLHG 443

  Fly   499 GCPVLQGSKWICNEWFHVGAQEFRR 523
            ||.|.:|:|||.|.|.:|.....|:
  Rat   444 GCLVTRGTKWIANNWINVDPSRARQ 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PH4alphaSG1NP_733376.1 P4Ha_N 23..157 CDD:285528
P4Hc 347..515 CDD:214780 72/245 (29%)
P4htmXP_217285.7 EF-hand_7 193..253 CDD:404394 11/60 (18%)
P4Hc 247..459 CDD:214780 67/211 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343178
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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