Protein Alignment Traf-like and COP1

DIOPT Version :10

• Sequence 1: NP_727976.1
• Gene: Traf-like / 32611
• FlyBaseID: FBgn0030748
• Length: 474
• Species: Drosophila melanogaster
• Sequence 2: NP_180854.1
• Gene: COP1 / 817857
• AraportID: AT2G32950
• Length: 675
• Species: Arabidopsis thaliana
• Alignment Length: 435
• Identity: 81/435 - (18%)
• Similarity: 173/435 - (39%)
• Gaps: 130/435 - (29%)

  Fly    60 CGQVLEE-----CPNG-C-QAFIPRIRMRSHLKECP-RNQHNLSNQQRMSVSMDRLDRQSDQRLL 116
            |.|::::     |.:. | ...|..:|.:|   :|| .:||..:||...:..:|:|.:::..|
plant    55 CMQIIKDAFLTACGHSFCYMCIITHLRNKS---DCPCCSQHLTNNQLYPNFLLDKLLKKTSAR-- 114

  Fly   117 VIEQDVGTIRSVLNEEIRQRLHLITDVGNIRKQNQVVEDWTRETEKAMDDLRRQMEEETNRKAFA 181
                .|....|.| ::.|:.|....|| :|::.:.::        ..:.:.:|:||:
plant   115 ----HVSKTASPL-DQFREALQRGCDV-SIKEVDNLL--------TLLAERKRKMEQ-------- 157

  Fly   182 IEQNQLDVQYCCDITQSLKEQVESRLDEAQKLVNQLSADVTYHQNQLNDNILKLEELIFENERLN 246
             |:.:.::|...|....|::|   ::||    :|::..|:.|.:..:|         ..|..|::
plant   158 -EEAERNMQILLDFLHCLRKQ---KVDE----LNEVQTDLQYIKEDIN---------AVERHRID 205

  Fly   247 ----REKFFQIEEFLQQINEDIKTK---------LG-NSDYVTSKQATL--DYEVKNVKNIVCET 295
                |:::   ...|:.:.:|..|:         :| ||:.::.:....  :|:.|.|:.....:
plant   206 LYRARDRY---SVKLRMLGDDPSTRNAWPHEKNQIGFNSNSLSIRGGNFVGNYQNKKVEGKAQGS 267

  Fly   296 EERCDKLDRALHQTMQNISDLETQMAMQQRIASVQNIRGHLIWRIKDYSK-KLEESKQYDTILHS 359
            .....|.|.......|:::.....||.::||.:          :..|..: .|::.:|.....:|
plant   268 SHGLPKKDALSGSDSQSLNQSTVSMARKKRIHA----------QFNDLQECYLQKRRQLADQPNS 322

  Fly   360 AMFSNKAFGYALRLDIYLNGKGTWKGRNMIACLNVLS--GEYDPLLAWPCRLQAEIIIRDQCTNV 422
            ...::|:   .:|.:.|.||...::        :||:  ..|..|     |:.|||
plant   323 KQENDKS---VVRREGYSNGLADFQ--------SVLTTFTRYSRL-----RVIAEI--------- 362

  Fly   423 ADAEDYVKTIFVRKKSDDFIQSNQYFHIPHKVITSRNYLRNDSMF 467
                         :..|.|..:|        :::|..:.|:|.:|
plant   363 -------------RHGDIFHSAN--------IVSSIEFDRDDELF 386

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Traf-like	NP_727976.1	SMC_prok_B	<131..>336	CDD:274008	38/220 (17%)
		MATH_TRAF_C	334..473	CDD:238168	24/137 (18%)
COP1	NP_180854.1	RING-HC_COP1	48..94	CDD:438167	11/41 (27%)
		PLN00181	<148..671	CDD:177776	57/323 (18%)
		WD40 repeat	375..418	CDD:293791	4/12 (33%)
		WD40 repeat	423..460	CDD:293791
		WD40 repeat	467..503	CDD:293791
		WD40 repeat	508..546	CDD:293791
		WD40 repeat	552..587	CDD:293791
		WD40 repeat	594..617	CDD:293791
		WD40 repeat	647..670	CDD:293791