DRSC/TRiP Functional Genomics Resources

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Protein Alignment Traf-like and traf5

DIOPT Version :10

Sequence 1:NP_727976.1 Gene:Traf-like / 32611 FlyBaseID:FBgn0030748 Length:474 Species:Drosophila melanogaster
Sequence 2:XP_021325328.1 Gene:traf5 / 563887 ZFINID:ZDB-GENE-071120-3 Length:542 Species:Danio rerio


Alignment Length:492 Identity:108/492 - (21%)
Similarity:186/492 - (37%) Gaps:120/492 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SRKDLTEQNQYQNQNENQNQPKSTTIVKYEKSSCLFCNEWFDAQTFTEH-LIHCGQVLEECPNGC 71
            |..|.::....:|..|:|....|     |...:|.:|.:.|.......| ...|..|...|.|.|
Zfish   136 SHSDCSDIVLRKNLLEHQRNACS-----YRLETCHYCRQNFPVSQMMGHQKSSCPDVEVPCSNNC 195

  Fly    72 QAFIPRIRMRSHLKECPRNQHNLSNQQRMSVSMDRLDRQ-----SDQRLLVIEQDVGTIRSVLNE 131
            ...|.|.::::|..||            :.|..|.:.:.     .|:|        |.::...|.
Zfish   196 TQMIKRHQLQAHADEC------------LEVETDCVYKNYGCTVRDKR--------GKVQVHENT 240

  Fly   132 EIRQRLHLITDVGNIRKQNQVVEDWTRETEKAMDDLRRQM---EEETNRKAFAIEQNQLDVQYCC 193
            |....:.|            |:|..|: .||.|:.|::.|   :.....|:..:.....||..| 
Zfish   241 EFSAHVRL------------VLESNTK-LEKQMEQLQQDMLVQQGVLKDKSLVVSSLDRDVSLC- 291

  Fly   194 DITQSLKEQVESRLDEAQKLVNQLSADVTYHQNQLNDNILKLEELIFENERLNREKFFQIEEFLQ 258
                      ::.|...|:.|.:....:...|.:|.|                          |:
Zfish   292 ----------DNTLTTLQRSVEEQRVRICSVQRELRD--------------------------LR 320

  Fly   259 QINEDIKTKLGNSDYVTSKQATLDYEVKNVKNIVCETEERCDKLDRALHQTMQNISDL-----ET 318
            .:..::|.:|      ...||:||    :::..|..||...:.|. ||.||.:..:.|     |.
Zfish   321 VLGSELKEEL------PRLQASLD----SLRQQVAVTESLREHLG-ALEQTCERHTRLLDIHVEQ 374

  Fly   319 QMAMQQRIASVQ--NIRGHLIWRIKDYSKKLEESKQYDTILHSAMFSNKAFGYALRLDIYLNGKG 381
            ....:||:..::  :..|.|||:::||..:    |:....|.|:.|.....||.|.:..||.|.|
Zfish   375 LQCNEQRLRQLESSSYDGKLIWKVRDYWHR----KESGAALSSSPFYTSRSGYKLSVRAYLGGDG 435

  Fly   382 TWKGRNMIACLNVLSGEYDPLLAWPCRLQAEIIIRDQC--------TNVADAEDYVKTIFVRKKS 438
            :.:|.:|...:.::.|::|..|.||.|....:.:.||.        |.:.|..   ...|.|..|
Zfish   436 SGRGSHMSLYITIMRGDFDSFLPWPFRQNITLTLLDQSGTRNHMSHTFIPDVN---SDSFHRPTS 497

  Fly   439 DDFIQSNQYFHIPH-KVITSRN--YLRNDSMFIEVRV 472
            |..:.:.....|.| .:...||  ::|::::||:|:|
Zfish   498 DANVATGFTRFISHCDLENPRNAVFVRDETLFIKVKV 534

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf-likeNP_727976.1 SMC_prok_B <131..>336 CDD:274008 40/214 (19%)
MATH_TRAF_C 334..473 CDD:238168 42/150 (28%)
traf5XP_021325328.1 RING_Ubox 35..90 CDD:473075
zf-TRAF 124..179 CDD:280357 10/47 (21%)
zf-TRAF 179..237 CDD:280357 16/77 (21%)
SMC_prok_B <192..>384 CDD:274008 52/272 (19%)
MATH_TRAF_C 392..535 CDD:238168 42/150 (28%)
Blue background indicates that the domain is not in the aligned region.

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