DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Traf-like and traf2b

DIOPT Version :9

Sequence 1:NP_727976.1 Gene:Traf-like / 32611 FlyBaseID:FBgn0030748 Length:474 Species:Drosophila melanogaster
Sequence 2:XP_005165556.1 Gene:traf2b / 557526 ZFINID:ZDB-GENE-030131-5345 Length:532 Species:Danio rerio


Alignment Length:473 Identity:96/473 - (20%)
Similarity:190/473 - (40%) Gaps:113/473 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LTEQNQYQNQNENQNQPKSTTIVKYEKSSCLFCNEWFDAQTFTEHLIHCGQVLEECPNGCQAFIP 76
            |:|::::     |:.:.::.|:      :|.:|...|:.:....|...|.:...:|.:..:..||
Zfish   156 LSEKDRH-----NERECEARTL------NCKYCKVTFNFKEIKAHDEICQKFPMQCKDCGKKKIP 209

  Fly    77 RIRMRSHLKECPRNQHNLSNQQRMSVS----MDRLDRQSDQRLLVIEQDVGTIRSVLNEEIRQRL 137
            |.:.:.|.|.|.:::   |..|...:.    :|...:|..::..::            |.:|..|
Zfish   210 REKFQEHTKSCAKSK---SACQFREIGCRAVVDNCKQQEHEQTSIM------------EHLRLML 259

  Fly   138 HLITDVGNIRKQNQVVEDWTRETEKAMDDLRRQMEEETNRKAFAIEQNQLDVQYCCDITQSLKEQ 202
            .|::   ::|.:.:...:|..:....   |.|..|:.....|.             ::.:.....
Zfish   260 ALLS---SMRLRAEGAGEWQEDVGLG---LYRGPEDAPPAGAH-------------NVGRGGGPG 305

  Fly   203 VESRLDEAQKLVNQLSADVTYHQNQLNDNILKLEELIFENERLNREKFFQIEEFLQQINEDIKTK 267
            |:.::...:.:|..|:.:|                   |...|..|                   
Zfish   306 VQKKVTTLENIVCVLNKEV-------------------ERSALTME------------------- 332

  Fly   268 LGNSDYVTSKQATLDYE-VKNVKNIVCETEERCDKLDRALHQTMQNISDLETQMAMQQRIASVQN 331
                  ..|:|..||.| ::|:.|.|.:.|......|..|.::.|::.:|:           ...
Zfish   333 ------AISRQHRLDQEKIENLSNKVRQLERTLTTRDLQLAESEQSLRELQ-----------FCT 380

  Fly   332 IRGHLIWRIKDYSKKLEE--SKQYDTILHSAMFSNKAFGYALRLDIYLNGKGTWKGRNMIACLNV 394
            ..|..||:|.::|::.::  :.:...:...|.:|:| :||.:.|.:||||.||.:|.::.....|
Zfish   381 YDGVFIWKIAEFSRRRQDAVAGRAPAMFSPAFYSSK-YGYKMCLRLYLNGDGTGRGSHLSLFFVV 444

  Fly   395 LSGEYDPLLAWPCRLQAEIIIRDQCT--NVADA--EDYVKTIFVRKKSDDFIQSNQYFHIP-HKV 454
            :.|:||.||.||...:..:::.||..  ::.||  .|...|.|.|..|:..|.|......| .|:
Zfish   445 MKGKYDALLKWPFSQKVTLMLLDQNNREHIIDAFRPDVSSTSFQRPISEMNIASGCPLFCPLAKL 509

  Fly   455 ITSRNYLRNDSMFIEVRV 472
            ....:|||:|::||:..|
Zfish   510 AGKSSYLRDDTIFIKAIV 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf-likeNP_727976.1 zf-TRAF_2 <54..88 CDD:292587 8/33 (24%)
MATH_TRAF_C 334..473 CDD:238168 46/146 (32%)
traf2bXP_005165556.1 RING 44..86 CDD:238093
zf-TRAF 189..246 CDD:280357 13/59 (22%)
TRAF_BIRC3_bd 307..359 CDD:293278 15/95 (16%)
MATH_TRAF2 365..528 CDD:239747 49/175 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10131
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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