DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Traf-like and traf4a

DIOPT Version :9

Sequence 1:NP_727976.1 Gene:Traf-like / 32611 FlyBaseID:FBgn0030748 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_991325.1 Gene:traf4a / 404045 ZFINID:ZDB-GENE-040308-1 Length:470 Species:Danio rerio


Alignment Length:514 Identity:104/514 - (20%)
Similarity:155/514 - (30%) Gaps:222/514 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SRKDLTEQNQYQNQNENQNQPKSTTIVKYEKSSCLFCNEWFDAQTFTEHLIHCGQVLEECPNGCQ 72
            :|:||.|..|:       :.||       .|..|.||...|..:.:..|...|.|....|.|.|.
Zfish   122 TRRDLPEHLQH-------DCPK-------RKVKCEFCGSEFTGEAYENHQGICPQESVYCENKCG 172

  Fly    73 AFIPRIRMRSH-LKECPRNQHNLSNQQRMSVSMDRLDRQSDQRLLVIEQDVGTIRSVLNEEIRQR 136
            |.:.|..:..| :.|||:                                               
Zfish   173 ARMMRRLLSQHTMTECPK----------------------------------------------- 190

  Fly   137 LHLITDVGNIRKQNQVVEDWTRETEKAMDDLRRQMEEETNRKAFAIEQNQLDVQYCCDITQSLKE 201
                                           |.|                 ..:||.      ||
Zfish   191 -------------------------------RTQ-----------------PCKYCG------KE 201

  Fly   202 QVESRLDEAQKLVNQLSADVTYH--------QNQL-NDNILKLEELIFENERLNREKFFQIEEFL 257
            .|...:...|           ||        .||. ..||.:                   |:..
Zfish   202 FVYDTIQNHQ-----------YHCPRFPVQCPNQCGTPNIAR-------------------EDLA 236

  Fly   258 QQINEDIKTKLGNSDYVTSKQATLDYEVKNVKNIVCETEE-----RCDK--LDRAL------HQT 309
            ..:.|...:.|                      ::|..:|     ||.|  :.|.|      |.|
Zfish   237 NHVKESCGSAL----------------------VLCPFKEAGCKHRCPKMAIGRHLEESTKSHLT 279

  Fly   310 M-------QNISDLETQMAMQQRIASVQNIRGHLIWRIKDYSKKLEESK-QYDTILHSAMFSNKA 366
            |       |....||.:..|::...|..   |.|||::.|||:||:|:| :.:....|..|....
Zfish   280 MMCSLVGRQRQEILELRREMEELSVSHD---GVLIWKLTDYSRKLQEAKLRNNHEFFSPPFYTHR 341

  Fly   367 FGYALRLDIYLNGKGTWKGRNMIACLNVLSGEYDPLLAWPCRLQAEIIIRDQCTNVADAEDYVKT 431
            :||.|::..:|||.|:.:|.::...:.||.||||.||.||...:....|.||.........::..
Zfish   342 YGYKLQVSAFLNGNGSGEGSHLSIYIRVLPGEYDNLLEWPFSYKVTFSILDQSDPSLSKPQHITE 406

  Fly   432 IF--------------VRKKSDDFIQSNQYFHIP----HKVITSRNYLRNDSMFIEVRV 472
            .|              .|...|   :|...|..|    |:.|..|||:|::|:|::..:
Zfish   407 TFNPDPNWKNFQKPCSSRNSLD---ESTLGFGYPKFISHEEIKKRNYIRDNSIFLKASI 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf-likeNP_727976.1 zf-TRAF_2 <54..88 CDD:292587 10/34 (29%)
MATH_TRAF_C 334..473 CDD:238168 48/158 (30%)
traf4aNP_991325.1 RING 17..55 CDD:238093
zf-TRAF 102..156 CDD:280357 12/47 (26%)
zf-TRAF 156..210 CDD:280357 19/154 (12%)
zf-TRAF 210..269 CDD:280357 15/110 (14%)
MATH_TRAF4 308..463 CDD:239750 48/158 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0297
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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