DRSC/TRiP Functional Genomics Resources

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Protein Alignment Traf-like and traf4a

DIOPT Version :10

Sequence 1:NP_727976.1 Gene:Traf-like / 32611 FlyBaseID:FBgn0030748 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_991325.1 Gene:traf4a / 404045 ZFINID:ZDB-GENE-040308-1 Length:470 Species:Danio rerio


Alignment Length:514 Identity:104/514 - (20%)
Similarity:155/514 - (30%) Gaps:222/514 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SRKDLTEQNQYQNQNENQNQPKSTTIVKYEKSSCLFCNEWFDAQTFTEHLIHCGQVLEECPNGCQ 72
            :|:||.|..|:       :.||       .|..|.||...|..:.:..|...|.|....|.|.|.
Zfish   122 TRRDLPEHLQH-------DCPK-------RKVKCEFCGSEFTGEAYENHQGICPQESVYCENKCG 172

  Fly    73 AFIPRIRMRSH-LKECPRNQHNLSNQQRMSVSMDRLDRQSDQRLLVIEQDVGTIRSVLNEEIRQR 136
            |.:.|..:..| :.|||:                                               
Zfish   173 ARMMRRLLSQHTMTECPK----------------------------------------------- 190

  Fly   137 LHLITDVGNIRKQNQVVEDWTRETEKAMDDLRRQMEEETNRKAFAIEQNQLDVQYCCDITQSLKE 201
                                           |.|                 ..:||.      ||
Zfish   191 -------------------------------RTQ-----------------PCKYCG------KE 201

  Fly   202 QVESRLDEAQKLVNQLSADVTYH--------QNQL-NDNILKLEELIFENERLNREKFFQIEEFL 257
            .|...:...|           ||        .||. ..||.:                   |:..
Zfish   202 FVYDTIQNHQ-----------YHCPRFPVQCPNQCGTPNIAR-------------------EDLA 236

  Fly   258 QQINEDIKTKLGNSDYVTSKQATLDYEVKNVKNIVCETEE-----RCDK--LDRAL------HQT 309
            ..:.|...:.|                      ::|..:|     ||.|  :.|.|      |.|
Zfish   237 NHVKESCGSAL----------------------VLCPFKEAGCKHRCPKMAIGRHLEESTKSHLT 279

  Fly   310 M-------QNISDLETQMAMQQRIASVQNIRGHLIWRIKDYSKKLEESK-QYDTILHSAMFSNKA 366
            |       |....||.:..|::...|..   |.|||::.|||:||:|:| :.:....|..|....
Zfish   280 MMCSLVGRQRQEILELRREMEELSVSHD---GVLIWKLTDYSRKLQEAKLRNNHEFFSPPFYTHR 341

  Fly   367 FGYALRLDIYLNGKGTWKGRNMIACLNVLSGEYDPLLAWPCRLQAEIIIRDQCTNVADAEDYVKT 431
            :||.|::..:|||.|:.:|.::...:.||.||||.||.||...:....|.||.........::..
Zfish   342 YGYKLQVSAFLNGNGSGEGSHLSIYIRVLPGEYDNLLEWPFSYKVTFSILDQSDPSLSKPQHITE 406

  Fly   432 IF--------------VRKKSDDFIQSNQYFHIP----HKVITSRNYLRNDSMFIEVRV 472
            .|              .|...|   :|...|..|    |:.|..|||:|::|:|::..:
Zfish   407 TFNPDPNWKNFQKPCSSRNSLD---ESTLGFGYPKFISHEEIKKRNYIRDNSIFLKASI 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf-likeNP_727976.1 SMC_prok_B <131..>336 CDD:274008 33/233 (14%)
MATH_TRAF_C 334..473 CDD:238168 48/158 (30%)
traf4aNP_991325.1 mRING-HC-C3HC3D_TRAF4 15..59 CDD:438303
zf-TRAF 102..156 CDD:280357 12/47 (26%)
PLN03086 <113..211 CDD:178635 31/203 (15%)
zf-TRAF 210..269 CDD:280357 15/110 (14%)
MATH_TRAF4 308..463 CDD:239750 48/158 (30%)
Blue background indicates that the domain is not in the aligned region.

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