DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Traf-like and Pdzrn4

DIOPT Version :10

Sequence 1:NP_727976.1 Gene:Traf-like / 32611 FlyBaseID:FBgn0030748 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_001158065.1 Gene:Pdzrn4 / 239618 MGIID:3056996 Length:1014 Species:Mus musculus


Alignment Length:442 Identity:83/442 - (18%)
Similarity:156/442 - (35%) Gaps:150/442 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 LSNQQRMSVSM-DRLDRQSDQRLLVIEQDVGTIRS-------------VLNEEIRQRLHLITDVG 144
            :|:|:::.::: .|.|.:.|..:.|.|.|..:|.:             :..|:|:.|...:..:.
Mouse   389 VSSQEKLGLTVCYRTDDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDIQNREEAVALLS 453

  Fly   145 N----------IRKQNQVVEDWTRETEKAMDDLRRQMEEETNRKAFAIEQNQLDVQYCCDITQSL 199
            :          .|...|:.|.|       ::|.|.:..||.|.:....:.|:...:...::.|..
Mouse   454 SDECKRIVLLIARPDMQLDEGW-------LEDERNEFLEELNSELLEEDHNEGAQRTASELQQPK 511

  Fly   200 K-EQVESRLDEAQKLVNQLSADVTYHQNQLNDN-ILKLEELIFENERLNREKFFQIEEFLQQINE 262
            | |:.|...|.|....|          ||..|: :.:.:|.:..:|...:|.  .:||   ..:.
Mouse   512 KQEEEEGTTDTATSSSN----------NQEKDSGVGRTDESLRNDESSEQEN--AVEE---PHST 561

  Fly   263 DIKTK---------LGNSDYVTSK----------------------QATLDYEVKN--------- 287
            .:|:|         ||:.::..|:                      |..|:.:::|         
Mouse   562 TLKSKRELGKSQDTLGSLEHQCSESCAGGECLDSDCASNQEVCEGFQQLLELKIRNHGDYDLYYS 626

  Fly   288 VKNIVCETEERCDKLD---RALHQTMQNISDLETQMAMQQRIASVQNIRGHLIWRIKDYSKKLEE 349
            ...|.|...|: |.::   :.|::.::|| :||.|..||          .|.:.::.|       
Mouse   627 SSTIECNRGEQ-DGVEHELQLLNEELRNI-ELECQNIMQ----------AHRLQKVTD------- 672

  Fly   350 SKQYDTI--LHSAMFSNKAFGYALRLDIYLNGKGTWKGRNMIACLNVLSGEYDPLLAWPCRLQAE 412
              ||..|  ||...|                       ||....|:|..|:.|.::..|     |
Mouse   673 --QYGDIWALHDGGF-----------------------RNYNTSLDVQRGKLDDIMEHP-----E 707

  Fly   413 IIIRDQCTNVADAEDYVKTIFVRKKSDDFIQSNQYFHIPHKV-ITSRNYLRN 463
            ...:|..:....||....|.....:|.|       ..:|..: :|::..||:
Mouse   708 KSDKDSSSAYNTAESCRSTPLTVDRSPD-------SSLPRMINLTNKKNLRS 752

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf-likeNP_727976.1 SMC_prok_B <131..>336 CDD:274008 48/259 (19%)
MATH_TRAF_C 334..473 CDD:238168 26/133 (20%)
Pdzrn4NP_001158065.1 RING-HC_LNX4 12..65 CDD:438379
PDZ1-PDZRN4-like 202..293 CDD:467199
PDZ2-PDZRN4-like 379..467 CDD:467200 12/77 (16%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.