DRSC/TRiP Functional Genomics Resources

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Protein Alignment Traf-like and Traf4

DIOPT Version :10

Sequence 1:NP_727976.1 Gene:Traf-like / 32611 FlyBaseID:FBgn0030748 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_033449.2 Gene:Traf4 / 22032 MGIID:1202880 Length:470 Species:Mus musculus


Alignment Length:446 Identity:84/446 - (18%)
Similarity:140/446 - (31%) Gaps:140/446 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 FYFVSNGGNIKLSTGNRKVQFGFSIFWDTYQFIQTKY-------------------LNFSRSATL 123
            |.::.| ..::|...|.|||..|..   |.|.::..|                   :||.....:
Mouse   181 FLYIRN-RTLQLWLDNPKVQLTFEA---TVQQLEAPYNSDAVLVHRIHSYLERHGFINFGIYKRV 241

  Fly   124 PPLYSNMPDQQVVITADTRISATIVPPGVK--------DSFQYLRGVLFFDGTTRNSTYLGTGLQ 180
            .||.:....:.:||.|           ||.        .||.       .|.|...|.....|..
Mouse   242 KPLPTKKTGKVIVIGA-----------GVSGLAAARQLQSFG-------MDVTVLESRDRVGGRV 288

  Fly   181 LLTGKSQYVSTSNQMLISYIGDSWAVNNSPIVLQDYENTKSICKFEWILCP----DDQDCDGIVS 241
            ....|..||:....|:::.:|      .:|:.:...:....:.|.:. .||    :.|..:...|
Mouse   289 ATFRKGNYVADLGAMVVTGLG------GNPMAVVSKQVNMELAKIKQ-KCPLYEANGQAGERCTS 346

  Fly   242 LDGTKGSVALQLYHNKFET----------SFVLNKTLGFGK-LEVFDGGVTKTNLITTYDVNRSE 295
            :...|..:..|.::...|.          :|:.||.:..|: |||.              :...|
Mouse   347 VPKEKDEMVEQEFNRLLEATSYLSHQLDFNFLNNKPVSLGQALEVV--------------IQLQE 397

  Fly   296 LNLPQEFFGRLTTLVFTGETASLTFTRRDDAFDETTSFGRKGFISSDSYGNSFQEAFHINAPVKN 360
            .::..|.......:|.|.|...       |..::..:...|    .......::||..:..| ::
Mouse   398 KHVKDEQIEHWKKIVKTQEELK-------DLLNKMVTTKEK----VKELHQQYKEASEVKPP-RD 450

  Fly   361 PDTIFKVNIATADLSGSTTLIVYCYRYIELT----------RELSFNSTNLPPLNTTIT------ 409
            ....|.|.....||:      ..|..|.||.          :||..|    ||.:..::      
Mouse   451 ITAEFLVKSKHRDLT------ALCKEYDELVEMQVKLEERLQELEAN----PPSDVYLSSRDRQI 505

  Fly   410 FHGNFLHIEYYPNGTDSSKLFLNFDIEKSVTRSSEFFF-----------ACVIVFL 454
            ...:|.::| :.|.|..|.|.|     |...:..:|.|           :||.|.|
Mouse   506 LDWHFANLE-FANATPLSTLSL-----KHWDQDDDFEFTGSHLTVRNGYSCVPVAL 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf-likeNP_727976.1 SMC_prok_B <131..>336 CDD:274008 38/227 (17%)
MATH_TRAF_C 334..473 CDD:238168 31/148 (21%)
Traf4NP_033449.2 mRING-HC-C3HC3D_TRAF4 15..59 CDD:438303
zf-TRAF 102..156 CDD:280357
zf-TRAF 210..269 CDD:280357 10/69 (14%)
MATH_TRAF4 308..463 CDD:239750 29/187 (16%)
Blue background indicates that the domain is not in the aligned region.

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