DRSC/TRiP Functional Genomics Resources

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Protein Alignment Traf-like and Traf3

DIOPT Version :10

Sequence 1:NP_727976.1 Gene:Traf-like / 32611 FlyBaseID:FBgn0030748 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_035762.2 Gene:Traf3 / 22031 MGIID:108041 Length:567 Species:Mus musculus


Alignment Length:492 Identity:106/492 - (21%)
Similarity:203/492 - (41%) Gaps:118/492 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 RKDLTEQNQYQNQNENQNQPKSTTIVKYEKSSCLFCNEWFDAQTFTEHL-IHCGQVLEECPNGCQ 72
            ||||.:..:              ...||.:::|..|..........:|. ..|..|:..||:.|.
Mouse   158 RKDLRDHVE--------------KACKYREATCSHCKSQVPMIKLQKHEDTDCPCVVVSCPHKCS 208

  Fly    73 A-FIPRIRMRSHLKECPRNQHNLSNQQRMSVSMDRLDRQSDQRLLVIEQDVGTIRSVLNEEIRQR 136
            . .:.|..:.:||.||.......|.::                       .|.:....|::|:..
Mouse   209 VQTLLRSELSAHLSECVNAPSTCSFKR-----------------------YGCVFQGTNQQIKAH 250

  Fly   137 LHLITDVGNIRKQNQVVEDWTRETEKAMDDLRRQMEEETNRKAFAIEQNQLDVQYCCDITQSLKE 201
                 :..:..:...::::|:...||.:..|:.:          ::|:|:        ..|||..
Mouse   251 -----EASSAVQHVNLLKEWSNSLEKKVSLLQNE----------SVEKNK--------SIQSLHN 292

  Fly   202 QV---ESRLDEAQKLVNQLSADVTYHQNQLNDNILKLEELIFENERLNREKFFQIEEFLQQINED 263
            |:   |..::..::::....:.:.:.|..::....||:||         :|  :|..|.|...| 
Mouse   293 QICSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLKEL---------DK--EIRPFRQNWEE- 345

  Fly   264 IKTKLGNSDYVTSKQATLDYEVKNVKNIVCETEERCDKLDRALHQTMQNISDLETQMAMQQRIAS 328
                   :|.:.|       .|::::|.|.|.|    .:|::..|..:|...||:|::...::.|
Mouse   346 -------ADSMKS-------SVESLQNRVTELE----SVDKSAGQAARNTGLLESQLSRHDQMLS 392

  Fly   329 VQNIR-----------------GHLIWRIKDYSKKLEESKQYDTI-LHSAMFSNKAFGYALRLDI 375
            |.:||                 |.|||:|:||.::.:|:....|: |:|..|....|||.:...:
Mouse   393 VHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARV 457

  Fly   376 YLNGKGTWKGRNMIACLNVLSGEYDPLLAWPCRLQAEIIIRDQCT---NVADA--EDYVKTIFVR 435
            ||||.|..||.::.....::.||||.||.||.:.:..:::.||.:   ::.||  .|...:.|.:
Mouse   458 YLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKK 522

  Fly   436 KKSDDFIQSNQYFHIPHKVITSRNYLRNDSMFIEVRV 472
            ...:..|.|.....:...|:.:..|:::|::||:|.|
Mouse   523 PTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 559

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf-likeNP_727976.1 SMC_prok_B <131..>336 CDD:274008 40/224 (18%)
MATH_TRAF_C 334..473 CDD:238168 45/145 (31%)
Traf3NP_035762.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..26
RING-HC_TRAF3 50..91 CDD:438302
zf-TRAF 135..191 CDD:280357 8/46 (17%)
zf-TRAF 196..246 CDD:280357 13/72 (18%)
Cast <243..>389 CDD:431111 36/198 (18%)
MATH_TRAF3 377..562 CDD:239746 52/183 (28%)
Blue background indicates that the domain is not in the aligned region.

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