DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Traf-like and trf-1

DIOPT Version :9

Sequence 1:NP_727976.1 Gene:Traf-like / 32611 FlyBaseID:FBgn0030748 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_499773.2 Gene:trf-1 / 176767 WormBaseID:WBGene00006612 Length:462 Species:Caenorhabditis elegans


Alignment Length:471 Identity:83/471 - (17%)
Similarity:165/471 - (35%) Gaps:137/471 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 FCNEWFDAQTFTEHLIHCGQVLEECPNGCQ---------AFIPRI---------------RMRSH 83
            :|.:.|:.:..|.....|..:::  |..||         ..:|.:               .:..|
 Worm    37 YCRQCFENENRTPGCAACQTIIQ--PELCQHDRAKQKQILALPVVCTFESSGCPWDGQLGTLHDH 99

  Fly    84 LKECPRNQHNLSNQQRMSVSMDRLDRQSDQRLLVIEQDVGTIRSVLNEEIRQRLHLITDVGNIRK 148
            |.||         ..:.|:..::..||..:..|              |:.|.:..|         
 Worm   100 LSEC---------TFKSSLKCEKCGRQFAKNDL--------------EKHRAKCEL--------- 132

  Fly   149 QNQVVEDWTRETEKAMDDLRRQMEEETNRKAFAIEQNQLDVQYCCDITQSLKEQVESRLDEAQKL 213
             |:.|..:..:|.:..|   |:...:|      ..|..:...:.|.:|...:.::|:....... 
 Worm   133 -NRAVCSFCNKTIRDSD---RERHPKT------CPQVIISCPFQCGLTDRPRLEIEAHCPSCPN- 186

  Fly   214 VNQLSADVTYHQNQLNDNILKLEELIFENERLNREKFFQIEEFLQQ--INEDIKTKLGNSDYVTS 276
            |:.:...|.|...                       |...:|.:||  .:|.::..:...|.:|.
 Worm   187 VDNVCPFVPYGCT-----------------------FAGGKESIQQHLSDEPVRHLMYLCDEITD 228

  Fly   277 KQATLDYEVKNVKNIVCETEERCDKLDRALHQTMQNISDLETQMAMQQRIASVQNIRGHLIWRIK 341
            .:.|  ||:                    :.:.|.:.:|.:|:: :.......:.....|||:|.
 Worm   229 LKGT--YEL--------------------MERDMGSFNDRQTRI-LSAAETCTEMFGPQLIWKID 270

  Fly   342 DYSKKLEESKQ-YDTILHSAMFSNKAFGYALRLDIYLNGKGTWKGRNMIACLNVLSGEYDPLLAW 405
            ...::..|:|. .||.:.|..|.:..|||.:.....|.|.|:..|:::...:.:|.||:||.|.|
 Worm   271 KLQQRTNEAKSGADTTIFSVPFMSHRFGYKMMACACLFGDGSSAGKSISLYVLLLKGEFDPTLEW 335

  Fly   406 PCRLQAEIIIRDQCTNVADAEDYVKTIFVRKKSDDFIQSNQYFHIPHK--------------VIT 456
            |.....:|.:.||.....|..:....|..||     :::|:.|....:              :..
 Worm   336 PFHRAIKISLLDQNPRPEDRVNITYVIDPRK-----LKANEKFLARPRGERNAAFGSQSFCSLAI 395

  Fly   457 SRNYLRNDSMFIEVRV 472
            .:||:::|.:::::.|
 Worm   396 LQNYVKDDKIYVQIDV 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf-likeNP_727976.1 zf-TRAF_2 <54..88 CDD:292587 9/57 (16%)
MATH_TRAF_C 334..473 CDD:238168 38/154 (25%)
trf-1NP_499773.2 zf-TRAF 152..210 CDD:280357 11/87 (13%)
MATH_TRAF_C 264..412 CDD:238168 38/153 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0297
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.770

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