DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Traf-like and pdzrn3a

DIOPT Version :9

Sequence 1:NP_727976.1 Gene:Traf-like / 32611 FlyBaseID:FBgn0030748 Length:474 Species:Drosophila melanogaster
Sequence 2:XP_001921128.3 Gene:pdzrn3a / 100149029 ZFINID:ZDB-GENE-090313-307 Length:1033 Species:Danio rerio


Alignment Length:446 Identity:81/446 - (18%)
Similarity:149/446 - (33%) Gaps:158/446 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 EKSSCLFCNEWFDAQTFTEHLIHCGQVLEECPNGCQAFIPRIR------------MRSH------ 83
            :|...:.|.:..|.:|    .|:..::   .|.|..|...||:            ::||      
Zfish   432 DKFGLMLCYKMDDEKT----TIYVSKI---DPEGVAAKDGRIQEGDQIIQINGEEVQSHEVAVAL 489

  Fly    84 -LKECPRNQHNLSNQQRMSVSMDRLDRQ------SDQRLLVIEQDVGTIR----SVLNEEIRQRL 137
             .||..:|         :::.:.|.:||      .|.:|.::||....::    |:|.:..|:..
Zfish   490 LTKEDSKN---------VAILVARPERQDVCWLEEDLKLGILEQLNDKVKEFDTSMLQQSTREED 545

  Fly   138 HLITDVGNI-----RKQNQV--VEDWTRETEKAMDDLRRQMEEE------TNRKAFAIEQNQLDV 189
            ...||...:     .|.:.|  .::.||..|.:..|:....:..      .|.|.|:..|..|: 
Zfish   546 GGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQDILGDDQNSLCDTLPENHKKFSYSQGTLE- 609

  Fly   190 QYCCDITQSLKE--QVES------------------RLDEAQKLVNQ------LSADVTYHQNQL 228
              |.|:..|.:.  .|::                  :|.|.:.|:|.      |..|.|.:..::
Zfish   610 --CGDMNLSNESFLSVDNGDNGNFIGIPGTACERFRKLLELKCLMNSNNLQGLLEHDATQYGKRI 672

  Fly   229 NDNILKLEELIFENERLNRE---------KFFQIEE------------FLQQINEDIKTKLGNSD 272
            ..|....|:.:...:.||.|         ...|.|:            |::|:|:.:...|.|:.
Zfish   673 TTNCDDQEDQMLNKQLLNIELECLSIIQAHRLQAEDSGPQTTDPSTKHFIEQLNDKVHQDLLNNK 737

  Fly   273 YVTSKQATLDYEVKNVKNIVCETEERCDKLDRALHQTMQNISDLETQMAMQQRIASVQNIRG--- 334
             |.::.:|..|          .|.|.|..|..|          ||:.....||:......:|   
Zfish   738 -VDNECSTSAY----------NTGESCWSLQPA----------LESHSPESQRMLIADKGKGSPM 781

  Fly   335 -----------HLIWRIKDYS---------------KKLEESKQYDTILHSAMFSN 364
                       |.:..|::.|               |:.:..::....||.:.:.|
Zfish   782 IRRNSTTACSKHNLSPIREISPTKSLAGDPEVTNQGKRKQSKRKNPRSLHHSSYKN 837

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf-likeNP_727976.1 zf-TRAF_2 <54..88 CDD:292587 10/52 (19%)
MATH_TRAF_C 334..473 CDD:238168 8/60 (13%)
pdzrn3aXP_001921128.3 RING 15..76 CDD:302633
Sina 76..>131 CDD:302762
PDZ 242..334 CDD:214570
PDZ_signaling 422..503 CDD:238492 15/86 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0297
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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