DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Traf-like and traf1

DIOPT Version :9

Sequence 1:NP_727976.1 Gene:Traf-like / 32611 FlyBaseID:FBgn0030748 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_001121853.1 Gene:traf1 / 100148503 ZFINID:ZDB-GENE-071120-4 Length:551 Species:Danio rerio


Alignment Length:496 Identity:103/496 - (20%)
Similarity:190/496 - (38%) Gaps:120/496 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 NQNQPKSTTIVKYEKSSCLFCNEWFDAQTFTEHLIHCGQVLEECPNGCQAFIPRIRMRSHLKE-C 87
            ||..|..:|:                 :.|.:|...|...|..|..||...:.|..:.:||:. |
Zfish   119 NQGCPWRSTL-----------------KNFEDHQSQCEYALIPCNIGCGIMVQRKTLATHLESGC 166

  Fly    88 PRNQHNLSNQQRMSVSMDRLDRQSDQRLLVIEQDVGTIRSVLNEEIRQRLH-------LITDVGN 145
            |.|:....     |.:.....|:..:.:.....|..|.::...::..|..:       :.:|||.
Zfish   167 PNNKTACP-----SCTSVLTPRELQKHVCPSSGDKKTAKTDKKQKNNQPANSKKKEPCIFSDVGC 226

  Fly   146 IRKQNQVVEDWTRETEKAMDDLRRQMEEETNRKAFAIEQNQLDVQYCCDITQSLKEQVESRLD-- 208
            ..|.|   .|..:|.|..                    .:...:|...|:|::|:..:.|..:  
Zfish   227 PFKGN---PDKVKEHESC--------------------SHAGHLQLLLDVTRALQRTLNSATERV 268

  Fly   209 ------------EAQKLVNQLSADV--------------TYHQNQLNDNILKLEELIFENERLN- 246
                        ....|..|...|:              :.|.:|:.         :...::|: 
Zfish   269 YQDSPVFLEPGPNGSSLAPQADGDIETDGGDPGVSDKAFSLHDDQVE---------LAAGQQLDA 324

  Fly   247 -REKFFQIEEFLQQINEDI-KTKLG----NSDYVTSKQATLDYEVKNVKNIVCETEERCDKLDRA 305
             ::|...||..:..:|.:: ||::.    |.|:..|:|.     :::::..|.|.::|..:.|..
Zfish   325 LQQKVQVIENIISALNREVEKTQISVVAMNRDHCNSQQI-----IQHLEATVAELQQRLVRKDIL 384

  Fly   306 LHQTMQNISDLETQMAMQQRIASVQNIRGHLIWRIKDYSKKLEESKQYDTI-LHSAMFSNKAFGY 369
                   ||.|:..::.||.:    :..|...||:.|.|:|..|:.....| .:|..|....:|:
Zfish   385 -------ISSLQQSISAQQDV----SYDGTFYWRVCDVSQKQREAANSQKISQYSPAFYTARYGF 438

  Fly   370 ALRLDIYLNGKGTWKGRNMIACLNVLSGEYDPLLAWPCRLQAEIIIRD--QCTNVADA--EDYVK 430
            .:.|.:||||.|..||.::.....::.|||||:|:||.:.:....:.|  |..:|.||  .|...
Zfish   439 KVCLRLYLNGDGAGKGSHISLFFVIMKGEYDPILSWPFKHKVTFFLLDQNQREHVIDAFRPDLSS 503

  Fly   431 TIFVRKKSDDFIQSNQYFHIPHKVITS--RNYLRNDSMFIE 469
            ..|.:..||..:.|......|.|.:.|  ..|.::|:::|:
Zfish   504 MSFHQPVSDMNVASGCPLFFPLKKLRSPKHAYCKDDTIYIK 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf-likeNP_727976.1 zf-TRAF_2 <54..88 CDD:292587 9/34 (26%)
MATH_TRAF_C 334..473 CDD:238168 43/143 (30%)
traf1NP_001121853.1 zf-TRAF 134..188 CDD:280357 14/58 (24%)
TRAF_BIRC3_bd 320..375 CDD:293278 13/59 (22%)
MATH_TRAF1 402..548 CDD:239748 43/143 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0297
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10131
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

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