Protein Alignment nonA and PAB1

DIOPT Version :9

• Sequence 1: NP_727962.1
• Gene: nonA / 32603
• FlyBaseID: FBgn0004227
• Length: 742
• Species: Drosophila melanogaster
• Sequence 2: NP_011092.1
• Gene: PAB1 / 856912
• SGDID: S000000967
• Length: 577
• Species: Saccharomyces cerevisiae
• Alignment Length: 568
• Identity: 115/568 - (20%)
• Similarity: 186/568 - (32%)
• Gaps: 186/568 - (32%)

  Fly   304 LYVGNLTNDITDDELREMFKPYGEISEI------FSNLDKNFTFLKVDYHPNAEKAKRALDGSMR 362
            ||||:|...:::..|.::|.|.|.:|.|      .:.....:.::..:.|....||...|:.:..
Yeast    40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPI 104

  Fly   363 KGRQLRVRFAPNATILR--------VSNLTPFVSNELLYKSFEIFGPIERASITVDDRGKHMGEG 419
            |||..|:.::.....||        :.||.|.:.|:.||.:|.:||.|..:.|..|:.||..|.|
Yeast   105 KGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFG 169

  Fly   420 IVEFAKKSSASACLRMCNEKCFFLTASLRPCLVDPMEVNDDTDGLPEKA----FNKKMPDFNQER 480
            .|.|.::.:|...:...|.    :..:.:...|.|.....:.|...|:.    .|..:.:.|.|.
Yeast   170 FVHFEEEGAAKEAIDALNG----MLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSET 230

  Fly   481 S----------IGPRFADPNSFEHEYGSRWKQLHNL-FKTKQDALKRELKMEEDKLEAQMEYARY 534
            :          .||..:  .|.|.:...:.|....: ::..:||:|....:.:.:|..:..|...
Yeast   231 TDEQFQELFAKFGPIVS--ASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGR 293

  Fly   535 EQETELLRQELRKR------------------------EVDNERKKLEWE------------MRE 563
            .|:.......|:|:                        .||:|  |||.|            ||.
Yeast   294 AQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE--KLEEEFAPYGTITSAKVMRT 356

  Fly   564 KQA-------------EEMRK-------------------REEETMRRHQTEMQSHMNRQEEDML 596
            :..             ||..|                   .:.:.:||.|...|.    |..:.:
Yeast   357 ENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQI----QARNQM 417

  Fly   597 RRQQETL------------FM------------------KAQQLNSLLDQQEGFGGGGGGNNSTF 631
            |.||.|.            ||                  ..||:|.:         ||...|...
Yeast   418 RYQQATAAAAAAAAGMPGQFMPPMFYGVMPPRGVPFNGPNPQQMNPM---------GGMPKNGMP 473

  Fly   632 DNFAGNSNSPFEVF---------RGNNNNNS-------TMIGNN-------AAPNTQEIKRLDGP 673
            ..|   .|.|  |:         |..|:||.       ..:|..       ...|.:...::.|.
Yeast   474 PQF---RNGP--VYGVPPQGGFPRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGM 533

  Fly   674 INEITSNFSPPDLDSDIILVAFVLEEFSSHVFYTKIVQKCESFKKRTQ 721
            |.::......|.|:||        |.|..|  |.:.....|||||..:
Yeast   534 ILDLPPQEVFPLLESD--------ELFEQH--YKEASAAYESFKKEQE 571

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nonA	NP_727962.1	RRM1_p54nrb_like	301..371	CDD:240778	19/72 (26%)
		RRM2_p54nrb_like	377..456	CDD:240779	24/86 (28%)
		NOPS_NONA_like	447..546	CDD:240580	18/113 (16%)
		GBP_C	<508..613	CDD:303769	34/202 (17%)
		coiled coil	584..595	CDD:293879	2/10 (20%)
		coiled coil	603..613	CDD:293879	5/39 (13%)
PAB1	NP_011092.1	PABP-1234	38..559	CDD:130689	110/554 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	0	0.000